View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_82 (Length: 400)
Name: NF11453A_low_82
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 31859608 - 31859928
Alignment:
| Q |
21 |
agtctagtagatcaatatcaacaacaaagacaaatgttgggtttggcaattcctgtatgctaataaatttagaattcagaccctccggagctggaaagtg |
120 |
Q |
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| T |
31859608 |
agtctagtagatcaatatccacaacaatgacaaatgttgggtttggcaattcctgtatgctaataaatttagaattcagaccctccggagctggaaagtg |
31859707 |
T |
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| Q |
121 |
agcatcaaagtcgttgctttgagttgaagtttttgcttcaaatagttcttttagaatttgtgttaatccattccattcagatgcttccatagtgagcacg |
220 |
Q |
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| T |
31859708 |
agtatcaaagtcgttgttatgagttgaagtttttgcttcaaatagttcttttagaatttgtgttaatccattccattcagatgcttccatagtgagcacg |
31859807 |
T |
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| Q |
221 |
ccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagtgcaagaagtacctgcattgatatgacacttcttatttcagggtgtg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31859808 |
ccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagtgcaagaagtacctgcattgatatgacacttcttatttcagggtgtg |
31859907 |
T |
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| Q |
321 |
cttattatctttccagtgaac |
341 |
Q |
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| T |
31859908 |
cttattatcttttcagtgaac |
31859928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 8869545 - 8869428
Alignment:
| Q |
175 |
aatttgtgttaatccattccattcagatgcttccatagtgagcacgccgtttttctgtaaccacttagatgtaattaatctactcatgttgccatgcagt |
274 |
Q |
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||||||||||| |||||||||||||||||||||||| ||| ||| || ||||| ||||||||| ||||| |||| ||||| |||||| || || ||| |
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| T |
8869545 |
aatttgtgttagtccattccattcagatgcttccattgtgcacaccccttttttggttaaccactttgatgttattattctacccatgtttccttgtagt |
8869446 |
T |
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| Q |
275 |
gcaagaagtacctgcatt |
292 |
Q |
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||||| | |||||||||| |
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| T |
8869445 |
gcaagcaatacctgcatt |
8869428 |
T |
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