View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_83 (Length: 399)
Name: NF11453A_low_83
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_83 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: scaffold0279 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 53 - 379
Target Start/End: Complemental strand, 21553 - 21227
Alignment:
| Q |
53 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
152 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21553 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
21454 |
T |
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| Q |
153 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
252 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21453 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
21354 |
T |
|
| Q |
253 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21353 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
21254 |
T |
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| Q |
353 |
taagattttacgccttatattttgact |
379 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21253 |
taagattttacgccttatattttgact |
21227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 53 - 379
Target Start/End: Complemental strand, 27527672 - 27527346
Alignment:
| Q |
53 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
152 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27527672 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27527573 |
T |
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| Q |
153 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
252 |
Q |
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| T |
27527572 |
ctgttatatctatatgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
27527473 |
T |
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| Q |
253 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatataaaagcacagtgtaacgcattcaagggatctcggctgttgat |
352 |
Q |
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| T |
27527472 |
agataagaacaaaaatctttaataaacatattgccaaattattagacaaaatctatctaaaagcacagtgtaacgcattcaagggatctcggctgttgat |
27527373 |
T |
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| Q |
353 |
taagattttacgccttatattttgact |
379 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27527372 |
taagattttacgccttatattttgact |
27527346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 53 - 297
Target Start/End: Complemental strand, 27533396 - 27533152
Alignment:
| Q |
53 |
aacataaattgaatgtaaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcatcccaattag |
152 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27533396 |
aacataaattgaatgtcaacaaaagtacaatgaattacctcccaaaggtctcttgcttgaacaacagtttttggtggaatgccaatgtcattccaattag |
27533297 |
T |
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| Q |
153 |
ctgttatatcaatctgcttctgtgggcctctattaaggaacacaacagctaccctgtaacctgaaagaggacctgcccatatctaaccaaaaaagcatgc |
252 |
Q |
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|||||||||| || |||||||| | |||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| ||| ||||| |
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| T |
27533296 |
ctgttatatctatatgcttctgagtgcctttattaagcaacacaacagctaccctatatcctgaaagaggacctgcccatatctatccaacaaaacatgc |
27533197 |
T |
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| Q |
253 |
agataagaacaaaaatctttaataaacatattgccaaattattag |
297 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27533196 |
agataagaacaaaaatctttaataaacatagtgccaaattattag |
27533152 |
T |
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