View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_87 (Length: 393)
Name: NF11453A_low_87
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_87 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 44187286 - 44187662
Alignment:
| Q |
10 |
gcatataagtaacttcataaagttcaactttgcaatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccacacaaaggcta |
109 |
Q |
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| T |
44187286 |
gcatataagtaacttcataaagttcaactttgcaatctaatattaaatcctaagaactagactcataagcctt-agggtgagaactccacacaaaggcta |
44187384 |
T |
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| Q |
110 |
caaaagaaattaattgtctgcaactctaaacggaagaaggtttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctca |
209 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44187385 |
caaaagaaattaattgtctgcaactccaaacgaaagaaggtttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctca |
44187484 |
T |
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| Q |
210 |
atcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctctttccaagctccgataggatttggaatgcaag |
309 |
Q |
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| T |
44187485 |
atcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctctttccaagctccggtaggatttggaatgcaag |
44187584 |
T |
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| Q |
310 |
ccaaaacaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattccttaacaccaa |
387 |
Q |
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| T |
44187585 |
ccaaaaaaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattccttaacaccaa |
44187662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 19162865 - 19162988
Alignment:
| Q |
1 |
agccattttgcatataagtaacttcataaagttcaactttg-caatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccac |
99 |
Q |
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| T |
19162865 |
agccagtttgcatataagcaacttcagaaagttcaacttaggcaatagaatatcaaatcctaagaactagactcataaaccttgagggtgaaaacttcac |
19162964 |
T |
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| Q |
100 |
acaaaggctacaaaagaaattaat |
123 |
Q |
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| T |
19162965 |
aaaaaggctataaaagcaattaat |
19162988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 28866885 - 28867005
Alignment:
| Q |
41 |
gcaatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccacacaaaggctacaaaagaaattaattgtctgcaactctaaac |
140 |
Q |
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| T |
28866885 |
gcaatgaaatatcaaatcctaagaactagactcctaa-ccttgagggtaaaaactccacacaaaggctacaaatacaattaattgtctataactcgaaat |
28866983 |
T |
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| Q |
141 |
ggaagaaggtttttcttgtaaa |
162 |
Q |
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| T |
28866984 |
ggaagaaggtttttcttataaa |
28867005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 28995312 - 28995114
Alignment:
| Q |
41 |
gcaatcaaatattaaatcctaataactagactcataaaccttgatggtgagaactccacacaaaggctacaaaagaaattaattgtctgcaactctaaac |
140 |
Q |
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||||| |||||| ||||||||| |||||||||| | | |||||| ||||| || ||||||||||||||| ||| | |||||||||||| ||||| ||| |
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| T |
28995312 |
gcaatgaaatataaaatcctaagaactagactcctga-ccttgagggtgaaaattccacacaaaggctagaaatgcaattaattgtctataactccaaat |
28995214 |
T |
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| Q |
141 |
ggaagaaggtttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagcta |
240 |
Q |
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| T |
28995213 |
ggaagaagatttttcttgtaaatgaaaatatgg---caaaactgttctgctttaacatcaatctcctcaatcactccggtagttaaatcaaaacaaacta |
28995117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 19163077 - 19163166
Alignment:
| Q |
151 |
ttttcttgtaaactaccatttggcaacaataattttctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagtt |
243 |
Q |
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|||||||||||||||||| ||| |||| | | |||| || ||||||||||||||||||||| ||||||||| || || ||||||||||||| |
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| T |
19163077 |
ttttcttgtaaactaccacttg---acaaaattgttctgctttaacaccaatctcctcaatcatcccggtagttaaatcaaaacaagctagtt |
19163166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 9764702 - 9764643
Alignment:
| Q |
187 |
ctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagttcat |
246 |
Q |
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| T |
9764702 |
ctactttaacatcaatcttctcaatcaccccagtagctaaatctaaacaagctagttcat |
9764643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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