View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_88 (Length: 392)
Name: NF11453A_low_88
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_88 |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 22 - 378
Target Start/End: Complemental strand, 25617067 - 25616711
Alignment:
| Q |
22 |
tgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25617067 |
tgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccat |
25616968 |
T |
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| Q |
122 |
tttactacccacactacaatagagtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616967 |
tttactacccacactacaatagagtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgat |
25616868 |
T |
|
| Q |
222 |
aagataaataatatcattgttaggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616867 |
aagataaataatatcattgttaggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaa |
25616768 |
T |
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| Q |
322 |
ttttaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtc |
378 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616767 |
tttcaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtc |
25616711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 13299090 - 13299015
Alignment:
| Q |
44 |
gatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaacc |
119 |
Q |
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| T |
13299090 |
gatcttatcaagctctttgtgggcacaaagcatactgcaaaagtgacagcgatggtgattttaaagatcagaaacc |
13299015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 13261184 - 13261127
Alignment:
| Q |
75 |
atactgtaaaagtgacaatgatgatgattttatagatcagaaaccattttactaccca |
132 |
Q |
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|||||| ||||| |||||||||| |||||| |||||||||||||| ||| ||| |||| |
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| T |
13261184 |
atactgcaaaagagacaatgatggtgatttaatagatcagaaaccttttcactgccca |
13261127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 5848 - 6204
Alignment:
| Q |
22 |
tgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaatgatgatgattttatagatcagaaaccat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5848 |
tgaggtgcaaaaaagatgttatgatcttatcaacctcattttggacacaaatcatactgtaaaagtgacaataatgatgattttatagatcagaaaccat |
5947 |
T |
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| Q |
122 |
tttactacccacactacaatagagtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5948 |
tttactacccacactacaatagagtattcaagtatgatcaaacactccatagagagttatagtattgttaaagcttatttgggattataatcatgttgat |
6047 |
T |
|
| Q |
222 |
aagataaataatatcattgttaggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6048 |
aagataaataatatcattgttaggccttgccgagagatagttttaggtttttggaagcattcgtgcaataaactcatttatatctattaactaattggaa |
6147 |
T |
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| Q |
322 |
ttttaccaatgaaatccagaaacaattagaaaacccggtaccatctactttgatgtc |
378 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6148 |
tttcaccaatgaaatccagaaacaattagtaaacccggtaccatctactttgatgtc |
6204 |
T |
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