View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_9 (Length: 551)
Name: NF11453A_low_9
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 218 - 545
Target Start/End: Complemental strand, 40289248 - 40288921
Alignment:
| Q |
218 |
gttgatttggttaggtgcatatatatttgaattactaacttaattgttttggttttctcaaggtttattagattggttcaagctaatgaacttcttaatt |
317 |
Q |
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| T |
40289248 |
gttgatttggttaggtgcatatatatttgaattactaacttaattgttttggttttctcaaggtttattagattggttcaagctaatgaacttcttaatt |
40289149 |
T |
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| Q |
318 |
tctattaatctgttaattgttttattctatgattaataggtcattatttttcatttgatgaccaatgcagggactacaagataaaatcaaattggtttct |
417 |
Q |
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| T |
40289148 |
tctattaatctgttaatttttttattctatgattaataggtcattatttttcatttgatgaccaatgcagggactacaagataaaatcaaattggtttct |
40289049 |
T |
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| Q |
418 |
attaaccttcaagataggcctgcttggtataaggagaaagtctacccagaaaacaaggtgtgtttagcttgctcatacagggaaataaattactcaattc |
517 |
Q |
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| T |
40289048 |
attaaccttcaagataggcctgcttggtataaggagaaagtctacccagaaaacaaggtgtgtttaacttgctcatacagggaaataaattactcaattc |
40288949 |
T |
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| Q |
518 |
tcacccagttgatcattatattcttcga |
545 |
Q |
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| T |
40288948 |
tcacccagttgatcattattttcttcga |
40288921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 40289451 - 40289303
Alignment:
| Q |
6 |
acgcacaacgtgcatggatcgctagaaactataaggtttgtcttttcttgtcttgctcctctttgtttattgttttatattttgcacaaatacacaaatc |
105 |
Q |
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| T |
40289451 |
acgcacaacgtgcatggatcgctagaaactataaggtttgtcttttcttgtcttgctcctctttgtttattgttttatattttgcacaaatacacaaatc |
40289352 |
T |
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| Q |
106 |
tatttg-ttttacttttgatattgataaataaaaaactcaactgaagct |
153 |
Q |
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| T |
40289351 |
tatttgtttttacttttgatattgataaataaaaaactcaactgaagct |
40289303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 476
Target Start/End: Complemental strand, 28910515 - 28910424
Alignment:
| Q |
385 |
cagggactacaagataaaatcaaattggtttctattaaccttcaagataggcctgcttggtataaggagaaagtctacccagaaaacaaggt |
476 |
Q |
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| T |
28910515 |
cagggactacaagaccaaatccaactggttccttttgaccttcaaaacagacctgcttggtataaggaaaaagtataccctgaaaataaggt |
28910424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 476
Target Start/End: Complemental strand, 28923004 - 28922937
Alignment:
| Q |
409 |
ttggtttctattaaccttcaagataggcctgcttggtataaggagaaagtctacccagaaaacaaggt |
476 |
Q |
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| T |
28923004 |
ttggttcctattgaccttcaaaataggcctgcttggtacaaggaaaaagtatatcctgaaaataaggt |
28922937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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