View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453A_low_91 (Length: 391)
Name: NF11453A_low_91
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_91 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 12174286 - 12174052
Alignment:
| Q |
18 |
atggaaacagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaag---gatgtgaatctgagacaaataagg |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12174286 |
atggaagcagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaagaaggatgtgaatctgagacaagtaagg |
12174187 |
T |
|
| Q |
115 |
aaactcacacagtggacggttctgaatctgatgagcaagaagaaacagttccagcagcaatgaattttcagcaaagtgtctatggaactcccaatctgga |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12174186 |
aaactcacacagtggagggttctgaatctgatgagcaagaagaaacagttccaccagcaatgaattttcagcaaagtgtctatggaactcccaatctgga |
12174087 |
T |
|
| Q |
215 |
agcagtagaaacaaaagacttaaggtaatcttctt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12174086 |
agcagtagaaacaaaagacttaaggtaatattctt |
12174052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 12418714 - 12418480
Alignment:
| Q |
18 |
atggaaacagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaag---gatgtgaatctgagacaaataagg |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
12418714 |
atggaagcagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaagaaggatgtgaatctgagacaagtaagg |
12418615 |
T |
|
| Q |
115 |
aaactcacacagtggacggttctgaatctgatgagcaagaagaaacagttccagcagcaatgaattttcagcaaagtgtctatggaactcccaatctgga |
214 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12418614 |
aaactcacacagtggagggttctgaatctgatgagcaagaagaaacagttccaccagcaatgaattttcagcaaagtgtctatggaactcccaatctgga |
12418515 |
T |
|
| Q |
215 |
agcagtagaaacaaaagacttaaggtaatcttctt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12418514 |
agcagtagaaacaaaagacttaaggtaatattctt |
12418480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 12185801 - 12185569
Alignment:
| Q |
15 |
aatatggaaacagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaag---gatgtgaatctgagacaaata |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
12185801 |
aatatggaagcagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaagaaggatgtgaatctgagacaagta |
12185702 |
T |
|
| Q |
112 |
aggaaactcacacagtggacggttctgaatctgatgagcaagaagaaacagttccagcagcaatgaattttcagcaaagtgtctatggaac---tcccaa |
208 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12185701 |
aggaaactcacacagtggagggttctaaatctgatgagcaagaagaaacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaa |
12185602 |
T |
|
| Q |
209 |
tctggaagcagtagaaacaaaagacttaaggta |
241 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
12185601 |
tctggaaacagcagaaacagaagacttaaggta |
12185569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 12430229 - 12429997
Alignment:
| Q |
15 |
aatatggaaacagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaag---gatgtgaatctgagacaaata |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
12430229 |
aatatggaagcagcgataaaagagtgtggttttcgatggatatattcctcagaaggtcaagttgtcgaggaagaagaaggatgtgaatctgagacaagta |
12430130 |
T |
|
| Q |
112 |
aggaaactcacacagtggacggttctgaatctgatgagcaagaagaaacagttccagcagcaatgaattttcagcaaagtgtctatggaac---tcccaa |
208 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12430129 |
aggaaactcacacagtggagggttctaaatctgatgagcaagaagaaacagttccaccagcaatgaattttcagcaaagtgtctatggaactcttcccaa |
12430030 |
T |
|
| Q |
209 |
tctggaagcagtagaaacaaaagacttaaggta |
241 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
12430029 |
tctggaaacagcagaaacagaagacttaaggta |
12429997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 4272021 - 4272103
Alignment:
| Q |
158 |
aacagttccagcagcaatgaattttcagcaaagtgtctatggaactc---ccaatctgg-aagcagtagaaacaaaagactta |
236 |
Q |
| |
|
|||||||||| || |||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4272021 |
aacagttccaccaacaatgatttttcagcaaagtgtctatggaactctttccaatctggaaagcagtagaagcaaaagactta |
4272103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University