View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_92 (Length: 390)
Name: NF11453A_low_92
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_92 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 390
Target Start/End: Original strand, 30768290 - 30768677
Alignment:
| Q |
3 |
ccgcgggctggtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattc |
102 |
Q |
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| T |
30768290 |
ccgcgagcttgtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattc |
30768389 |
T |
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| Q |
103 |
gatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatg |
202 |
Q |
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| T |
30768390 |
gatggctgtgtgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatg |
30768489 |
T |
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| Q |
203 |
tgtcctccttctacttgaactatctctcctccagtactcctcatccctagttctcaccttctctatgctttctatggaaagttgtttctatttggtgggg |
302 |
Q |
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| T |
30768490 |
tgtcctccttctacttgaactatctctcctccagtactcctcatccctagttcccaccttctctatgctttctatgaaaagttgtttctatttggtgggg |
30768589 |
T |
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| Q |
303 |
ttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaag |
390 |
Q |
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| T |
30768590 |
ttggttttgggcttattgatgaggatattgataatgagtgtgtttttatttggagaaatgcaagtctaaccggaaagtgcttataaag |
30768677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 39077274 - 39077495
Alignment:
| Q |
13 |
gtcaatggaagactttgctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtg |
112 |
Q |
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| T |
39077274 |
gtcaatggcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtg |
39077373 |
T |
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| Q |
113 |
tgtgctgagagtcgaaccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttttttaccggtggctcgaactatgtgtcctcctt |
212 |
Q |
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| T |
39077374 |
tgtgctgataatcgaacacgtcgatcacgaggacctttcgcagtgtataccttactatgtctgtcttttctacctgtcgcccttacaatgtggcctcctt |
39077473 |
T |
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| Q |
213 |
ctacttgaactatctctcctcc |
234 |
Q |
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| T |
39077474 |
gaacttgaactatttctcctcc |
39077495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 22328097 - 22327946
Alignment:
| Q |
29 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcgaa |
128 |
Q |
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| T |
22328097 |
gcttttttaatgagccaatcgactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgta |
22327998 |
T |
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| Q |
129 |
ccctgcgatcgcgaggaccttttgatgtgtaaaccttgctgtgacgatcttt |
180 |
Q |
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| T |
22327997 |
cacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtcttt |
22327946 |
T |
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