View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_95 (Length: 388)
Name: NF11453A_low_95
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_95 |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 38568144 - 38568514
Alignment:
| Q |
18 |
gacatcaatacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaaccagttttt |
117 |
Q |
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| T |
38568144 |
gacatcaatacaacagtaagaagccatcctctggtaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaacctgttttt |
38568243 |
T |
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| Q |
118 |
tcaaacataaaataaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtccggtgtccaaacgacactaata |
217 |
Q |
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| T |
38568244 |
tcaaacataaaatgaaaccttcattcagaaaaataaattcaaagctatgtagtagacacttcacattaaatttgtgtccggtgtccaaacgacactaata |
38568343 |
T |
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| Q |
218 |
tgcgattacattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggttcatagattcaaagtaaccatt |
317 |
Q |
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| T |
38568344 |
tgcgattacattcaattattctatttttcaaattactactagtattgacgtactgtgtttggtgtccgtgctcgtggttcatagattcaaagtaaccatt |
38568443 |
T |
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| Q |
318 |
tactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaa |
388 |
Q |
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| T |
38568444 |
tactccaaaatcatattttacattcaactctaaaattcataccttctcacccatggcatcttgaataagaa |
38568514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 38527003 - 38527125
Alignment:
| Q |
18 |
gacatcaatacaacagtaagaagccatcctctgctaaatgctatcacaaaaccgccaacaaatgttgctattagctgcagaaatttcccaaccagttttt |
117 |
Q |
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||||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||| |
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| T |
38527003 |
gacatcataacaacagtaagaagccacccttttgtaaatgctatcacaaaacccccaataaatgttgctattagctgcagaaacttcccaacctgttttt |
38527102 |
T |
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| Q |
118 |
tcaaacataaaataaaaccttca |
140 |
Q |
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| T |
38527103 |
tcaaacacaaaattaaaccttca |
38527125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 38527178 - 38527213
Alignment:
| Q |
353 |
ttcataccttctcacccatggcatcttgaataagaa |
388 |
Q |
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| T |
38527178 |
ttcataccttctcacccatggcatcttgaataagaa |
38527213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 388
Target Start/End: Complemental strand, 51198113 - 51198081
Alignment:
| Q |
356 |
ataccttctcacccatggcatcttgaataagaa |
388 |
Q |
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| T |
51198113 |
ataccttctcacccatggcatcttgaataagaa |
51198081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 356 - 388
Target Start/End: Original strand, 49738535 - 49738567
Alignment:
| Q |
356 |
ataccttctcacccatggcatcttgaataagaa |
388 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
49738535 |
ataccttctctcccatggcatcttgaataagaa |
49738567 |
T |
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