View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453A_low_99 (Length: 383)
Name: NF11453A_low_99
Description: NF11453A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453A_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 104 - 373
Target Start/End: Original strand, 28611440 - 28611704
Alignment:
| Q |
104 |
catggaaaggtgtaagcttaattgcagtattttcccaannnnnnnncaaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatttatt |
203 |
Q |
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| T |
28611440 |
catggaaaggtgtaagcttaattgcagtattttcccaattttttt-caaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatatatt |
28611538 |
T |
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| Q |
204 |
cttcttatttgttgttgcttgatagcttggtgttatagctttaacatgctatcaagcacgacacttgacacgtcgacacccctataataacttgagaaaa |
303 |
Q |
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| T |
28611539 |
cttcttatttgttgttgcttgatagcttggtgttatagc-ttaacatgctatcaagcacgacacttgacacgtcgacacctctataataatttgagaaaa |
28611637 |
T |
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| Q |
304 |
tcaaatctcctcttccccacaagctgcataatcctcctcaaatgtaaacatcttgatgacgctgttcata |
373 |
Q |
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| T |
28611638 |
tcaaatctcctcttccccacaagctgcataa---tcctcaaatgtaaacatcttgatgatgctgttcata |
28611704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 28611389 - 28611429
Alignment:
| Q |
49 |
gccatctattgttctcttttaagatgaaaagaaaatatgaa |
89 |
Q |
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| T |
28611389 |
gccatctatggttctcttttaagatgaaaagaaaagatgaa |
28611429 |
T |
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