View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453_high_15 (Length: 475)
Name: NF11453_high_15
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 52484097 - 52484507
Alignment:
| Q |
15 |
ctctggctcgggttgtgcaacaaatgatggttcttggttgtagtgacggaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52484097 |
ctctggctcgggttgtgcaacaaatgatggttcttggttgtagtgacggaggttaaaggacctgatacggttgagaagtgaaggtgaacgattgagttga |
52484196 |
T |
|
| Q |
115 |
ggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52484197 |
ggttgttggatttggtcgtttttgggtggaccattgaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtg |
52484296 |
T |
|
| Q |
215 |
tgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttgagatcgagcttcaacactgactgaag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
52484297 |
tgaaccatgttgctatgaaagttgttgggtctgccatcgttgttaatttcttaatttggagggtttttgcgttga----gaccttcaac----actgaag |
52484388 |
T |
|
| Q |
315 |
agtgaagacaatgtagggtgggggtgtaaatagagaaaggaaaatcaccatttacgtcttagtcatgtagtcagaagaaaggag-aaaaaagttgataaa |
413 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52484389 |
agtgaa---------------gggtgtaaatagagaaaggaaaatcaccatttacgtc-tagtcatgtagtcagaagaaaggagaaaaaaagttgataaa |
52484472 |
T |
|
| Q |
414 |
taaataaatatcatgggggtggggaacttgtttct |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
52484473 |
taaataaatatcatgggggtggggaacttgtttct |
52484507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 52464891 - 52464962
Alignment:
| Q |
150 |
gaagcgagaagctagagctatggtacctatgacaaggtttacaatgatgaaaatagaagaaggtgtgaacca |
221 |
Q |
| |
|
|||||||||| | ||||| |||||||| ||||||||||| |||| |||||||| || ||| ||||||||||| |
|
|
| T |
52464891 |
gaagcgagaaacgagagcaatggtaccaatgacaaggttaacaaagatgaaaagaggagagggtgtgaacca |
52464962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University