View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_18 (Length: 446)
Name: NF11453_high_18
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 41984146 - 41984362
Alignment:
| Q |
14 |
ataggcacatatatggttagggtgattaatacagcatttgtgaattaggnnnnnnncagtccagtaacatgaagaaataattggtcatgttgggagaaat |
113 |
Q |
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| T |
41984146 |
ataggcacatatatggttagggtgattaatacagcatttgtgaattaggaaaaaaacagtccagtaacatgaagaaataattggtcatgttgggagaaag |
41984245 |
T |
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| Q |
114 |
tgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatgatgaactgatcatgcagatc |
213 |
Q |
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| T |
41984246 |
tgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaaaaactatagatgatgaactgatcatgcagatc |
41984345 |
T |
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| Q |
214 |
ccattacagatatttgt |
230 |
Q |
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| T |
41984346 |
ccattacagatatttgt |
41984362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 271 - 383
Target Start/End: Original strand, 41984367 - 41984479
Alignment:
| Q |
271 |
gcaatgaggtgaaatggagactgataatattaagtagaagctgtatggaaatgtttcctttgctgttaattatatgaatcctagaccccacattatgtct |
370 |
Q |
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| T |
41984367 |
gcaatgaggtgaaatggagactgataatattaagtagaagctgtatggaaatgtttcctttgctgttaattatatgaatcctagaccccacattatgtct |
41984466 |
T |
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| Q |
371 |
gtatttagttatg |
383 |
Q |
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| T |
41984467 |
gtatttagttatg |
41984479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 41986658 - 41986704
Alignment:
| Q |
386 |
gatgctggccagatactggtttaacaattttctgctcttgaaggtga |
432 |
Q |
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| T |
41986658 |
gatgatggccagatactggtttaacaattttatgctctttaaggtga |
41986704 |
T |
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