View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_26 (Length: 390)
Name: NF11453_high_26
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 37095579 - 37095213
Alignment:
| Q |
18 |
tgtgtgactctcacattcaagtgtatctttgactcacaacaataaccatattcttgagatctagaacctcacaactttggatacgtttgcatttgatcat |
117 |
Q |
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| T |
37095579 |
tgtgtgactctcacattcatgtgtttctttgactcacaacaata-ccatattcttgagatctagaacctcacaactttggatacgtttgcatttgatcat |
37095481 |
T |
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| Q |
118 |
ggaaatagagta----ttatttggtttaatttttcttcttgaaatgatccatattaatattgttagtattatgctcatggcaaaaatcaaacctcaaccg |
213 |
Q |
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| T |
37095480 |
ggaaatagagtagtgattatattgtttaatttttcttcttgaaatgatccatattaatattgttagtattatggtcatagcaaatatcaaacctcaaccg |
37095381 |
T |
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| Q |
214 |
tcctcatcaccttgttcattgacttcccacctcaatcaccaaattaaccaaccttatgtttcttggtttatttaatcaattaactggattatgttgagaa |
313 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37095380 |
tcctcatcaccttgttcattgacttcccatctcaatccccaaattaacc----ttatgtttcttggtttatttaatcaattaactggattatgttgagaa |
37095285 |
T |
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| Q |
314 |
gcacacttagatggattgtaagaggtttatgcatgacaacttattgaaatttcctaatgagtattacttttt |
385 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37095284 |
gcacacttagatggattgtaccaggtttatgcatgacaacttattgaaatttcctaatgagtattacttttt |
37095213 |
T |
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