View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_29 (Length: 373)
Name: NF11453_high_29
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 16820022 - 16820361
Alignment:
| Q |
17 |
gttggtgctattttagaggtagttatagatgaggatagcaatttccttactactccttttcatatacaagagttcaaggaacccttgttttccatgcacc |
116 |
Q |
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| T |
16820022 |
gttggtgctattttagaggtagttatagatgaggatagcaatttccttactactccttttcatacacaagagttcaaggaacccttgttttccatgcacc |
16820121 |
T |
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| Q |
117 |
cggacaagtgtccaggaccgaatggtttcaattatgnnnnnnnnnnnnnnnataacatttttggtctgtttgtagccctgatacatttcataaatgttac |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16820122 |
-ggacaagtgtccaggaccgaatggtttcaattatgttttttttttta-----aacattttttgtctgtttgtagccctgatacatttcataaatgttac |
16820215 |
T |
|
| Q |
217 |
acatggttgagtaataaccaaattccttcctctctaaactttgataacattgccttgattccttaggggaatgaacataagacaatgaaggattggcgac |
316 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16820216 |
acatggttgagtaataaccaaatcccttcctctctaaactttgataacattgccttgattcctcgggggaatgaacataagacaatgaaggattggcgac |
16820315 |
T |
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| Q |
317 |
caattgcattgtatatattctttataaattacatgtaaaagttctt |
362 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16820316 |
caattgcattgtgtatattctttataaattacatgtaaaagttctt |
16820361 |
T |
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