View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_30 (Length: 373)
Name: NF11453_high_30
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 18003494 - 18003823
Alignment:
| Q |
23 |
ctccttaaacatatgcactcgaagatattgtaggcatcatgagcggtggcggtttcttcgaccgtctcccttattcttctgcaaccttcaaaaccttaga |
122 |
Q |
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| T |
18003494 |
ctccttaaacatatgcactcgaagatattgtaggcatcatgagcggtgacggtttcttcgaccgtctcccttactcttctgcaaccttcaaaaccttaga |
18003593 |
T |
|
| Q |
123 |
atatttatggcgtccattaatgctctctttaatattaggcacacgtgcatgcgatacaatcgtataccaaaatctggattttgcaaatagatgtttggat |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18003594 |
atatttatggcgtccattaatgctctctttaatattaggcacacgtgcaagcgatacaatcgtataccaaaatctggattttgcaaatagatgttttgat |
18003693 |
T |
|
| Q |
223 |
atgattgacatcatggattcatgtttgatctcacaacgaagcaatg-nnnnnnnngtggtggtcggagtttgaattcgaatcttatgcattatttctacc |
321 |
Q |
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| T |
18003694 |
atgattgaca--------tcacgtttgatctcacaacgaagcaatgtttttttttgtagtgatcggagtttgaacctgaatcttatggattatccctacc |
18003785 |
T |
|
| Q |
322 |
aaccaaggagtga-gaccaacaaatcaatggttaaatt |
358 |
Q |
| |
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|||||| |||||| |||||||||||||||| ||||||| |
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| T |
18003786 |
aaccaaagagtgaggaccaacaaatcaatgtttaaatt |
18003823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 358
Target Start/End: Original strand, 20643032 - 20643362
Alignment:
| Q |
23 |
ctccttaaacatatgcactcgaagatattgtaggcatcatgagcggtggcggtttcttcgaccgtctcccttattcttctgcaaccttcaaaaccttaga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20643032 |
ctccttaaacatatgcactcgaagatattgtaggcatcatgagcggtgacggtttcttcgaccgtctcccttactcttctgcaaccttcaaaaccttaga |
20643131 |
T |
|
| Q |
123 |
atatttatggcgtccattaatgctctctttaatattaggcacacgtgcatgcgatacaatcgtataccaaaatctggattttgcaaatagatgtttggat |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20643132 |
atatttatggcgtccattaatgctctctttaatattaggcacacgtgcaagcgatacaatcgtataccaaaatctggattttgcaaatagatgttttgat |
20643231 |
T |
|
| Q |
223 |
atgattgacatcatggattcatgtttgatctcacaacgaagcaatg--nnnnnnnngtggtggtcggagtttgaattcgaatcttatgcattatttctac |
320 |
Q |
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|||||||||| ||| |||||||||||||||||||||||| || ||| |||||||||||| |||||||||| ||||| |||| |
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| T |
20643232 |
atgattgaca--------tcacgtttgatctcacaacgaagcaatgttttttttttgtagtgatcggagtttgaacctgaatcttatggattatccctac |
20643323 |
T |
|
| Q |
321 |
caaccaaggagtga-gaccaacaaatcaatggttaaatt |
358 |
Q |
| |
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||||||| |||||| |||||||||||||||| ||||||| |
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| T |
20643324 |
caaccaaagagtgaggaccaacaaatcaatgtttaaatt |
20643362 |
T |
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