View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_31 (Length: 371)
Name: NF11453_high_31
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 47340435 - 47340273
Alignment:
| Q |
23 |
aatgttatgactttattgaaaataaatagaataaaattaaacatattctaatcggttttggagtatctattagaatagctccaatactcgtcacagcgat |
122 |
Q |
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| T |
47340435 |
aatgttatgactttattgaaaataa-tagaataaaattaaacatattctaatcagttttggagtatctattagaatagctccaatactcgtcacagcgat |
47340337 |
T |
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| Q |
123 |
catgtaaattgaccaacataacactgaatctgatgataaccaaggtgttaatacactaatgacga |
187 |
Q |
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| T |
47340336 |
catgtaaattgaccaacataacactgaatctgatgataacc-aggtgttaatacactaatgacga |
47340273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 253 - 354
Target Start/End: Complemental strand, 47340274 - 47340173
Alignment:
| Q |
253 |
gacaagattacgatatctagtccagagatacccacagtggttagatcaccaaaattaaagtatcaccaagatacgcataatgattcaatattttggtgaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47340274 |
gacaagattacgatatctagtccagagatacccacaatggttagaccaccaaaattaaagtatcaccaagatacgcataatgattcaatattttggtgaa |
47340175 |
T |
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| Q |
353 |
at |
354 |
Q |
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|| |
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| T |
47340174 |
at |
47340173 |
T |
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