View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_4 (Length: 806)
Name: NF11453_high_4
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 73 - 795
Target Start/End: Complemental strand, 43603349 - 43602615
Alignment:
| Q |
73 |
aatgaaaaaccacttaaccttcgttctacccatattcactttctttaaatcaaccaatgtt-aatattgttagtttttatggtg----agaatggagatc |
167 |
Q |
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| T |
43603349 |
aatgaaaaaccacttaaccttcgttctacacatattcactttctttaaatcaaccaatgtttaatattgttagtttttatggtgggtgagaatggagatc |
43603250 |
T |
|
| Q |
168 |
aaacatttaacctctcatcacttcacttcttaactctta-------caccccatgcacaaattaaaaactttacaacccttgtgaaaaataatttcccca |
260 |
Q |
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| T |
43603249 |
aaacatttaacctctcatcacttcacttcttaactcttaactcttacaccccatgcacaaattaaaaactttactacccttatgaaaaataatttcccca |
43603150 |
T |
|
| Q |
261 |
taagtcataacttctccatcaataaaattgaactccaccgtgcaatggtctcacttatattacaaattaaaaatatgcatataaccggtgataaacattg |
360 |
Q |
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| T |
43603149 |
taagtcataacttctccatcaataaaattgaactccaccgtgcaatggtctcacttatattacaaattaaaaatatgcatataaccggtgataaacattg |
43603050 |
T |
|
| Q |
361 |
cataaacaaaaagaagaatcagactataggctaagtaatatgaagaaaaagagatgcaaacattgctaacataaagtctcaaatttccctagctttgcct |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603049 |
cataaacaaaaagaagaatcagactataggctaagtaatatgaagaaaaagagatgcaaacattgctaacataaagtctcaaatttccctagctttgcct |
43602950 |
T |
|
| Q |
461 |
taaactactcatttcttttgataattaataaatttacaaggatcggcaaaccgaacagagaaagatctagacaggtaatctggttcatcaaacactgtcc |
560 |
Q |
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| T |
43602949 |
taaactactcatttcttttgataattaataaatttacaaggatcggcaaaccgaacagagaaagatctagacaggtaatctggttcatcaaacactgtcc |
43602850 |
T |
|
| Q |
561 |
cttgttcaaaattctgagaataagtgaaaggatcataaggatcctgctgcaaaggtgatgatgtagactcaagtagcttcttcttctctttcttgagctt |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602849 |
cttgttcaaaattctgagaataagtgaaaggatcataaggatcctgctgcaaaggtgatgatgtagactcaagtagcttcttcttctctttcttgagctt |
43602750 |
T |
|
| Q |
661 |
catccacaacattttccatctaaatttacttgatcttgtagctgctgatagagagtttgtgtgctcgatatcatagcaaaatcttcccaattctttggtc |
760 |
Q |
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| T |
43602749 |
catccacaacattttccatctaaatttacttgatcttgtagttgctgatagagagtttgtgtgctcgatttcatagcaaaatcttcccaattctttggtc |
43602650 |
T |
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| Q |
761 |
ttcctgctagaattgcactcgcttttgatgtccat |
795 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
43602649 |
ttcctgctagaattgcactcgcttttgatatccat |
43602615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 43603430 - 43603374
Alignment:
| Q |
19 |
aagtggagggtaattaacccttgagcaaatatttcaga-ggttcgcacattactcaa |
74 |
Q |
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| T |
43603430 |
aagtggagggtaattaacccttgagcaaatatttcagagggttcgcacattactcaa |
43603374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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