View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_46 (Length: 311)
Name: NF11453_high_46
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 9676080 - 9676376
Alignment:
| Q |
1 |
taacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatttttcaaacactggacatacagagattatgaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9676080 |
taacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatttttcaaacactggacatacagagattatgaatg |
9676179 |
T |
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| Q |
101 |
ctgctttgaaatgacacaaatgcagatttgtattttgtttccaaatcctcacgctatcaaacgaatctgttacgatggttttaactccaactccaaacct |
200 |
Q |
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| T |
9676180 |
ctgctttgaaatgacacaaatgcagatttgtattttgtttccaaatcctcacgctatcaaacaaatctgttacgatggttttaactccaactccaaacct |
9676279 |
T |
|
| Q |
201 |
tacttatcaaggtcacaggtgtgaaagttctaaacgtcgactccaaaccttacttatcaaggcatcgtagaactctgaatgctttttactatctgtg |
297 |
Q |
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| T |
9676280 |
tacttatcaaggtcacagttgtgaaagttctaaacctcaactccaaaccttacttatcaaggcattgtagaactctgaatgctttttactatttgtg |
9676376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 10213681 - 10213821
Alignment:
| Q |
1 |
taacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatt-tttcaaacactggacatacagagattatgaat |
99 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |||| || |||||| | | ||||||| |
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| T |
10213681 |
taacttttttaaagaacatagtacacttcatcgtataattcatattgttgcacttggcaaatactttatttctaacattgagcatacacaaagtatgaat |
10213780 |
T |
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| Q |
100 |
gctgctttgaaatgac--acaaatgcagatttgtattttgt |
138 |
Q |
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| T |
10213781 |
gctgcttcaaaatgacttgtaaatgcagatttgcattttgt |
10213821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 10102468 - 10102410
Alignment:
| Q |
5 |
ttttttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaata |
63 |
Q |
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| T |
10102468 |
ttttttaaagaacatagtacaattcattgtataattcatattgttgcacttggcaaata |
10102410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 12105777 - 12105852
Alignment:
| Q |
1 |
taacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttggcaaatacatttttcaaaca |
76 |
Q |
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||||||||| ||||| ||||| ||||||||||||| |||| ||||||||| |||||||||| || |||||| |||| |
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| T |
12105777 |
taactttttcaaagagcatagaacacttcattgtacaattcatattgttgaacttggcaaacacttttttctaaca |
12105852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 12108062 - 12108142
Alignment:
| Q |
97 |
aatgctgctttgaaatgacaca--aatgcagatttgta-ttttgtttccaaatcctcacgctatcaaacgaatctgttacg |
174 |
Q |
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||||||||||||||||||| || |||||||||||||| ||||||| | |||||||||| | || |||| ||||||||||| |
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| T |
12108062 |
aatgctgctttgaaatgactcatgaatgcagatttgtatttttgttcctaaatcctcacaccattaaaccaatctgttacg |
12108142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9677623 - 9677677
Alignment:
| Q |
1 |
taacttttttaaagaacatagtacacttcattgtataatttatattgttgcacttg |
56 |
Q |
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||||||||||||| | ||||| ||||||||||||| |||| ||||||||||||||| |
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| T |
9677623 |
taacttttttaaa-agcatagaacacttcattgtacaattcatattgttgcacttg |
9677677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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