View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_5 (Length: 733)
Name: NF11453_high_5
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 15 - 723
Target Start/End: Original strand, 8456927 - 8457635
Alignment:
| Q |
15 |
tcacaaatacgattggtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8456927 |
tcacaaatacgattggtgggcaaatttagaaagcaaagttccggacatagctaaagctggaatcacttcagcatggttgccaccgccaactcattccttc |
8457026 |
T |
|
| Q |
115 |
tcgcctgaaggtaaaatcaactgcctttgaagtattaggcatacgattctagggtcttaaagtgcaataatttattgtctttcctctgttttgcaggtta |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457027 |
tcgcctgaaggttaaatcaactgcctttgaagtattaggcatacgattctagggtcttgaagtgcaataatttattgtctttcctctgttttgcaggtta |
8457126 |
T |
|
| Q |
215 |
cactcctcagaacctttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457127 |
cactcctcagaacctttactctcttaatagtaaatatggttctgagcatcaattaaaagctttacttcaaaagttgaagcaacagaaagtcagagcaatg |
8457226 |
T |
|
| Q |
315 |
gctgatatagttatcaatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctg |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457227 |
gctgatatagttatcaatcatcgtgttggtaccacccaaggacatggagggatgtataatcgttttgatggaattccattaccgtgggatgaacgtgctg |
8457326 |
T |
|
| Q |
415 |
taacatcatctactggtggactggtaacatatatgatacattcaaatatattttcattttattcgaatttgaatcccatgttcctcctgttgtatctttg |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457327 |
taacatcatctactggtggactggtaacatatatgatacatccaaatatattttcattttattcgaatttgaatcccatgttcctcctgttgtatctttg |
8457426 |
T |
|
| Q |
515 |
tgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457427 |
tgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggat |
8457526 |
T |
|
| Q |
615 |
ggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttagaatattgagggt |
714 |
Q |
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| T |
8457527 |
ggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacactacacctttagaatattgagggt |
8457626 |
T |
|
| Q |
715 |
tttcctttg |
723 |
Q |
| |
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||||||||| |
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| T |
8457627 |
tttcctttg |
8457635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 493 - 691
Target Start/End: Complemental strand, 6827925 - 6827728
Alignment:
| Q |
493 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
592 |
Q |
| |
|
|||||||| || |||||||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
6827925 |
tgttcctcttgctgtatctttgcgttgttcatttctggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
6827826 |
T |
|
| Q |
593 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
691 |
Q |
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| T |
6827825 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
6827728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 7e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 493 - 691
Target Start/End: Complemental strand, 27964568 - 27964371
Alignment:
| Q |
493 |
tgttcctcctgttgtatctttgtgttgtttatttcagggtaatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagatttt |
592 |
Q |
| |
|
|||||||| || | |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
27964568 |
tgttcctcttgctatatctttgcgttgttcatttcaggttaatcgaaacactggggccattttccacgggtttcccaatatcgaccacactcaagattgt |
27964469 |
T |
|
| Q |
593 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
691 |
Q |
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| T |
27964468 |
gtgagaaaggatatcataggatggcttcagtggcttcgccataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
27964371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 532 - 691
Target Start/End: Original strand, 9822258 - 9822416
Alignment:
| Q |
532 |
taatcgaaacactggggccattttccacgggtttcccaatatcgaccatactcaagattttgtgagaaaggatatcataggatggcttcagtggcttcgc |
631 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9822258 |
taatcgaaacactggggccattttccacgggtttccccatatcgaccacactcaagattttgtgagaaaggatatcataggatggcttcagtggctttgc |
9822357 |
T |
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| Q |
632 |
cataatgtaggctttcaggattttcgttttgattatgcaaaagggtaagatgtgctacac |
691 |
Q |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9822358 |
cataatgtgggctttcaggattttcgttttgattatgc-aaagggtaagatgtgctacac |
9822416 |
T |
|
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