View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_57 (Length: 290)
Name: NF11453_high_57
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_57 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 85 - 274
Target Start/End: Original strand, 50637317 - 50637503
Alignment:
| Q |
85 |
gggtgagggagccaagtgaggaaggatataataatttactccaaatgtgagatttattatatttctatgtaatttaatttaatttagtgggaggactact |
184 |
Q |
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| T |
50637317 |
gggtgggggagccaagtgaggaaggatatagtaatttactccaaatgtgagatgtat---atttctatgtaatttaatttaatttagtggggggactact |
50637413 |
T |
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| Q |
185 |
cccatgggctccttaaagagttccgtcgctggtaatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaat |
274 |
Q |
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| T |
50637414 |
cctatgggctccttaaagagttttgccactagtaatagaaacatgttcatcataatggtgggtgtttctcttattaacattgcactaaat |
50637503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 50636621 - 50636701
Alignment:
| Q |
1 |
cttgcttaatatgttagggggagcaaaaaatactaacataaaagtcatttgcaattttacctaatgattgggtttgggagg |
81 |
Q |
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| T |
50636621 |
cttgcttaatatgttagggggagcgaaaaatactaaaataaaagtcatttgcaattttacctaatgattgggtttgggagg |
50636701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 50637580 - 50637670
Alignment:
| Q |
183 |
ctcccatgggctccttaaagagttccgtcgctggt-aatagaaatgtgttcatcataatggcgggtgtttctcttattaacatcgcactaaat |
274 |
Q |
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| T |
50637580 |
ctcccatgggctccttaaagagttttgccactagtaaatagatatttgttcatcataatggtgagtggt--tcttattaacatcacactaaat |
50637670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 11915426 - 11915471
Alignment:
| Q |
14 |
ttagggggagcaaaaaatactaacataaaagtcatttgcaatttta |
59 |
Q |
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| T |
11915426 |
ttagggggagcgaaaaatactaacataaaagttatgtacaatttta |
11915471 |
T |
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