View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_58 (Length: 283)
Name: NF11453_high_58
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_58 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 7323954 - 7324221
Alignment:
| Q |
1 |
tttggtgaaagatttattagctaacacttcctcaacaaaagttccattattcactccttatttcacgaaggcatagaagaaaaaagaagttaaggtggca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7323954 |
tttggtgaaagatttattagctaacactgcctcaacggaagttccattattcactccttatttcacgaaggcacagaagaaaaaagaagttaaggtggca |
7324053 |
T |
|
| Q |
101 |
tacctaactcgttctcagggtccactccatcacctccaaaatgatggaatattcgggtagccggcaggacatgttattgttgtttggtttgacacgattc |
200 |
Q |
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| T |
7324054 |
tacctaactcgttctcagggtccactccatcacctcccaaatgatggaatattcggggagccggcaggacatgttattgttgtttggtttgacacaattc |
7324153 |
T |
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| Q |
201 |
tgtcctttttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttccctaggat |
268 |
Q |
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| T |
7324154 |
cgtcctttttgtctttagatttctttagggatatgaatttctttcctaactatcgctttccctaggat |
7324221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 8613094 - 8612977
Alignment:
| Q |
1 |
tttggtgaaagatttattagctaacacttcctcaacaaaagttccattattcactccttatttcacgaaggcatagaagaaaaaagaagttaaggtggca |
100 |
Q |
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| T |
8613094 |
tttggtgaaagatttattagcgaatagtgccacaatagaagttccatt-tactctcc--atttgacgaaggcacagaagaaaaaagtagttaaggcgaca |
8612998 |
T |
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| Q |
101 |
tacctaactcgttctcagggt |
121 |
Q |
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|||||||| |||||| ||||| |
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| T |
8612997 |
tacctaacccgttctaagggt |
8612977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 27095454 - 27095578
Alignment:
| Q |
1 |
tttggtgaaagatttattagctaacacttcctcaacaaaagttccattattcactccttatttcacgaaggcatagaagaaaaaagaagttaaggtggca |
100 |
Q |
| |
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||||||||||||||||||||| |||| | || ||||| ||||||| ||| ||||| ||| | ||||| ||| |||||||||||| ||||||| ||| |
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| T |
27095454 |
tttggtgaaagatttattagcgaacagtgccacaacagaagttcc---atttactccctatctgacgaatgcacagaagaaaaaagtggttaaggcagca |
27095550 |
T |
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| Q |
101 |
tacctaactcgttctcagggtccactcc |
128 |
Q |
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|||||||| |||||| ||||||| |||| |
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| T |
27095551 |
tacctaacccgttctaagggtccgctcc |
27095578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 27095631 - 27095711
Alignment:
| Q |
181 |
tgtttggtttgacacgattctgtcctttttgtccttaaatttctttagggatatgaattgctttcctaactatcgctttcc |
261 |
Q |
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||||||||||||||| || | ||| |||||||| ||| ||||||| ||||| |||||| |||| ||||||||||| ||||| |
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| T |
27095631 |
tgtttggtttgacacaatgccgtcttttttgtctttagatttcttgagggacatgaatagcttgcctaactatcgttttcc |
27095711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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