View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_6 (Length: 697)
Name: NF11453_high_6
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 18 - 689
Target Start/End: Complemental strand, 34921059 - 34920391
Alignment:
| Q |
18 |
attaggtcatatatcattcaatgtgtaacccctaaaacaaaccacacctaggacacgataccacatggtaccaataagagttatttgaatggtggtccaa |
117 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | || |
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| T |
34921059 |
attaggtcatatgtcattcaatgtgtaacccctaaaacaaaccacacctaggagacgataccacatggtaccaataagagttatttgaatggc---ctaa |
34920963 |
T |
|
| Q |
118 |
tagcattaattgaatagcatgagacgtaacagaaatgtgatgagtcgattacccacgtgatcatgaactataatcaggtctaatataccatattagaatt |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34920962 |
tagcattaattgaatagcatgagacgtaacagaaatgtgatgagtcgattacccacgtgatcatgaactataatcaggtctgatataccatattagaatt |
34920863 |
T |
|
| Q |
218 |
taggtcgagcctaaatcaactttacaaagttaacttgtcaagtgaagattgtttccacttataatacattgtttaatcatatctcatttaatattaatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34920862 |
taggtcgagcctaaatcaactttacaaagttaacttatcaagtgaagattgtttccacttataatacattgtttaatcatatctcatttaatattaatcc |
34920763 |
T |
|
| Q |
318 |
ttaactagatgaatttgtaaa-tataatgaaaattggcctatggtgttctattcaacatgctccttcaactaccgtgtcagctacagatgctattttttc |
416 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
34920762 |
ttaactagatgaatttgtaaaatataaagaaaattggcctatggagttctattcaacatgctccttcaactaccgtatcagctacagatgctattttt-c |
34920664 |
T |
|
| Q |
417 |
actacttcagaacttgtttgctgatttatcgcagcgattcgcaactgtgacatggagtctttgaaaacactgtaatcttagagtatcggatgatgtaacg |
516 |
Q |
| |
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||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
34920663 |
actacttcagaacttgtctgctaatttatcgtagcgtttcgcaactgtgacatggagtctttggaaacatcgtaatcttagagtatcggatgatgtaacg |
34920564 |
T |
|
| Q |
517 |
gaaactagtgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacatccctgactctattgtttccactgctctcagttcgt |
616 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
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| T |
34920563 |
gaaactaatgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacgcccctgacgctattgtttccactgctcccagttcgt |
34920464 |
T |
|
| Q |
617 |
cttcatcgaccctcaatggggggccttctacttcgacattacacaatggcaatcattggcaacatcctatgct |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34920463 |
cttcatcgaccctcaatggggggccttctacttcgacattacacaatggcaatcattggcaacatcctatgct |
34920391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 5e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 351 - 688
Target Start/End: Complemental strand, 38015863 - 38015526
Alignment:
| Q |
351 |
tggcctatggtgttctattcaacatgctccttcaactaccgtgtcagctacagatgctattttttcactacttcagaacttgtttgctgatttatcgcag |
450 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38015863 |
tggcctatggggttctatccaacatgctctttcaactaccgcgtcagctacaaatgctattttttcactacttcagaacttgtctgctgatttatcgcaa |
38015764 |
T |
|
| Q |
451 |
cgattcgcaactgtgacatggagtctttgaaaacactgtaatcttagagtatcggatgatgtaacggaaactagtgctttagtggtggagagagcttgaa |
550 |
Q |
| |
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||||| |||||||| | ||||||| ||| |||||| | ||||||||||| | ||| ||||||| |||||||||| |||||| |||||| ||||| ||| |
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| T |
38015763 |
cgattagcaactgtaatatggagtattttgaaacaccgcaatcttagagtttgggaagatgtaatagaaactagtgatttagttgtggagcgagctcgaa |
38015664 |
T |
|
| Q |
551 |
acatggttgttgattgacaattagcaaacatccctgactctattgtttccactgctctcagttcgtcttcatcgaccctcaatggggggccttctacttc |
650 |
Q |
| |
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| ||||||||||| || |||||||||| | ||||||| ||||||||||||| | || ||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
38015663 |
aaatggttgttgactggcaattagcaaccgcccctgacgctattgtttccacagatcccagttcgtcgtcattgaccctcaatggggggccttctacttc |
38015564 |
T |
|
| Q |
651 |
gacattacacaatggcaatcattggcaacatcctatgc |
688 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| |
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|
| T |
38015563 |
gacattacacaatggcagtcgatggcaacatcctatgc |
38015526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 521 - 667
Target Start/End: Original strand, 20660702 - 20660848
Alignment:
| Q |
521 |
ctagtgctttagtggtggagagagcttgaaacatggttgttgattgacaattagcaaacatccctgactctattgtttccactgctctcagttcgtcttc |
620 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||| || ||| | | || ||||||| ||| ||| ||| |||| |
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| T |
20660702 |
ctagcgctttagtggtggagtgagctcgaaacatggttgttgattggcaactagcaaacgcccttgatgccactgcttccactactcccaggtcgccttc |
20660801 |
T |
|
| Q |
621 |
atcgaccctcaatggggggccttctacttcgacattacacaatggca |
667 |
Q |
| |
|
|||| ||||||||||| |||| ||| |||||| |||| ||||||| |
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|
| T |
20660802 |
atcgcacctcaatggggagcctcctaggtcgacactacaaaatggca |
20660848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 20660568 - 20660669
Alignment:
| Q |
351 |
tggcctatggtgttctattcaacatgctccttcaactaccgtgtcagctacagatgctattttttcactacttcagaacttgtttgctgatttatcgcag |
450 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||| |||||||||| ||| |||||| || ||||||||||| ||||| | || |||||| ||| |
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| T |
20660568 |
tggcctatggggttctattcaacatgccctctcaactaccacgtcagctacatatgttattttctccctacttcagaatttgttcggtggtttatcacag |
20660667 |
T |
|
| Q |
451 |
cg |
452 |
Q |
| |
|
|| |
|
|
| T |
20660668 |
cg |
20660669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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