View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_62 (Length: 269)
Name: NF11453_high_62
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_62 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 77 - 259
Target Start/End: Complemental strand, 52391653 - 52391477
Alignment:
| Q |
77 |
tgtacaagatttccacattccctcctatattttccacctctgaagccatcccttctcataccttttaaactctcaaaattggaacagaattcctgttcca |
176 |
Q |
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| T |
52391653 |
tgtacaagatttccacattccctcctatattttccaactctgaagtcatcccttctcatacctttcaaactctcaaaattggaacagg------gttcca |
52391560 |
T |
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| Q |
177 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttccctttg |
259 |
Q |
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| T |
52391559 |
acttgaagagggaatcttattagtgatattacaaaaactaatgatgattggaggctaaattttttatgttccttttccctttg |
52391477 |
T |
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