View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_high_66 (Length: 252)

Name: NF11453_high_66
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_high_66
NF11453_high_66
[»] chr2 (12 HSPs)
chr2 (17-252)||(11149186-11149419)
chr2 (17-215)||(11145252-11145450)
chr2 (17-186)||(11136953-11137122)
chr2 (17-175)||(11104106-11104264)
chr2 (86-190)||(11171246-11171350)
chr2 (16-187)||(11155568-11155739)
chr2 (93-213)||(11177259-11177379)
chr2 (17-175)||(11095647-11095805)
chr2 (17-175)||(11110101-11110259)
chr2 (17-174)||(11118105-11118262)
chr2 (93-187)||(10794016-10794110)
chr2 (56-124)||(11191955-11192023)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11149186 - 11149419
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11149186 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttagatgttgtgaatc 11149285  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaattatcatctacactggtatatatata 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  11149286 aaatcaaaacagctgtggaaaaggcttgtcctaacacagtttcttgcgctgatattcttgccctttctgctgaattatcatctacactgg--tatatata 11149383  T
Q  217 tgcctcaaactgtactatatatttttctcatttacc 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  11149384 tgcctcaaactgtactatatatttttctcatttacc 11149419  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 11145252 - 11145450
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| || |||| |||  |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11145252 tgtgatgcatcagttttgttgaataacactgctactattgtcagtgaacaagatgcttttccaaacagaaactcattgagaggtttggatgttgtgaatc 11145351  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaattatcatctacactggtatatatat 215  Q
    ||||||||||||| || |||||| |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  11145352 aaatcaaaacagcagtagaaaaggcttgccctaacacagtttcttgtgctgatattcttgctcttgctgctgaattatcatctacactggtatatatat 11145450  T

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Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 11136953 - 11137122
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| ||||| |  |||||  || |||||||||||||||||||||    
T  11136953 tgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaatc 11137052  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgc 186  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11137053 aaatcaaaacagcagtggaaaaggcttgtcctaacacagtttcttgtgctgatattcttgccctttctgc 11137122  T

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Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11104106 - 11104264
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    ||||||| |||||||||  ||||||| ||||||||  ||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||     
T  11104106 tgtgatggatcagttttgttgaacaacactgatacaattgtgagtgaacaagatgcatttccaaacagaaactcattaaagcgtttggatgttgtgaata 11104205  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||||| || ||| |    ||||||||||| |||||||||||||||||||||    
T  11104206 aaatcaagacagcagttgaagaagaatgtcctaacactgtttcttgtgctgatattctt 11104264  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 190
Target Start/End: Original strand, 11171246 - 11171350
Alignment:
Q  86 aactcattaagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctg 185  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||| ||| |||    
T  11171246 aactcaataagaggtttagatgttgtgaatcaaatcaaaacagcagtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgctcttgctg 11171345  T
Q  186 ctgaa 190  Q
    |||||    
T  11171346 ctgaa 11171350  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 11155568 - 11155739
Alignment:
Q  16 atgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaat 115  Q
    ||||||||| || |||||  ||||||| |||| |||  | || || |||||| | ||||||||||| |  ||||| |||||||||||||||||||| |||    
T  11155568 atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgtaaat 11155667  T
Q  116 caaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgct 187  Q
    || |||||||| ||| | ||||   ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  11155668 cagatcaaaactgctatagaaagtgcttgtcctaacacagtttcttgtgctgatattcttgctcttgctgct 11155739  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 11177259 - 11177379
Alignment:
Q  93 taagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgctgaatt 192  Q
    ||||||||||||| ||  | || || ||||||||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  11177259 taagaggtttggacgtgataaaccagatcaaaacagcggtggaaaatgcttgtcctaacactgtttcttgtgctgatattcttgccctttctgctgaaat 11177358  T
Q  193 atcatctacactggtatatat 213  Q
    ||| |||   |||||||||||    
T  11177359 atcttctgatctggtatatat 11177379  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11095647 - 11095805
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    ||||||| |||||||||  ||||||| ||| ||||| | || ||||| ||||||||  ||||||||| |||||||||||| |||||||||||||| || |    
T  11095647 tgtgatggatcagttttgttgaacaacactaataccatagtaagtgagcaagatgcacttccaaacataaactcattaaggggtttggatgttgtaaacc 11095746  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||||| || |||||    |||||   ||| |||||||||||||||||||||    
T  11095747 aaatcaagacagcagttgaaaatgaatgtccagccactgtttcttgtgctgatattctt 11095805  T

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Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 11110101 - 11110259
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| || || |  ||  |||||||||||||||||||||||||||| |  ||||| |||||||| ||||||||| | ||||    
T  11110101 tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc 11110200  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattctt 175  Q
    ||||||| ||    ||||||||  |||| ||||| | ||||||||||||||||||||||    
T  11110201 aaatcaagactaaagtggaaaaagcttgccctaatagagtttcttgtgctgatattctt 11110259  T

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Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 11118105 - 11118262
Alignment:
Q  17 tgtgatgcatcagttttactgaacaaaactgataccgttgtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatc 116  Q
    |||||||||||||||||  |||| ||||||  |||  ||| ||||||||||||||||  |||||| | |||||| |||||| | ||||||||| | ||||    
T  11118105 tgtgatgcatcagttttgttgaataaaacttctactattgcgagtgaacaagatgctggtccaaatataaactccttaagaagattggatgttatcaatc 11118204  T
Q  117 aaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattct 174  Q
    | || ||||| |  ||||||||   ||||||||| | |||||||||||||||||||||    
T  11118205 agattaaaactgaggtggaaaaagtttgtcctaataaagtttcttgtgctgatattct 11118262  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 10794110 - 10794016
Alignment:
Q  93 taagaggtttggatgttgtgaatcaaatcaaaacagctgtggaaaagtcttgtcctaacacagtttcttgtgctgatattcttgccctttctgct 187  Q
    ||||||||||| | ||||||||||  ||||| ||||  ||||||||  |||| ||||| |||||||||||||||||||||||||| ||| |||||    
T  10794110 taagaggtttgcaagttgtgaatcgtatcaagacagacgtggaaaaagcttgccctaatacagtttcttgtgctgatattcttgcacttgctgct 10794016  T

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Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 11192023 - 11191955
Alignment:
Q  56 gtgagtgaacaagatgcttttccaaacagaaactcattaagaggtttggatgttgtgaatcaaatcaaa 124  Q
    |||||||| ||||  ||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  11192023 gtgagtgagcaaggagctttgccaaatagaaactcaataagaggtttggatattgtgaatcaaatcaaa 11191955  T

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