View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453_high_68 (Length: 250)
Name: NF11453_high_68
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_68 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11149406 - 11149643
Alignment:
| Q |
1 |
ttttctcatttaccattgaattttcaaatccaattattaattctgcttatttgttttgtgatgaaataaaataggcagatggtcctgactggaaggttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11149406 |
ttttctcatttaccattgaattttcaaatccaattattaattctgcttatttgttttgtgatgaaataaaataggcagatggtcctgactggaaagttcc |
11149505 |
T |
|
| Q |
101 |
tttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttccagctcctttcaatactactgatcaacttaaagctgcatttgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149506 |
tttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttccagctcctttcaatactactgatcaacttaaagctgcatttgct |
11149605 |
T |
|
| Q |
201 |
gctcaaggtctcgatactactgatctggttgcactctc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11149606 |
gctcaaggtctcgatactactgatctggttgcactctc |
11149643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 11145520 - 11145708
Alignment:
| Q |
50 |
tttgttttgtgatgaaataaaataggcagatggtcctgactggaaggttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaa |
149 |
Q |
| |
|
|||||||||||||| |||||||||| | | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
11145520 |
tttgttttgtgatgtaataaaatagtctcaaggtcctgattggaaagttcctttaggaagaagagatggtttaacagcaaaccaatcacttgctaatcaa |
11145619 |
T |
|
| Q |
150 |
aatcttccagctcctttcaatactactgatcaacttaaagctgcatttgctgctcaaggtctcgatactactgatctggttgcactctc |
238 |
Q |
| |
|
||||||||||||||||| || | |||||||| ||||||||||||||| ||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
11145620 |
aatcttccagctccttttaactcattagatcaactcaaagctgcatttgcttctcaaggcctcagtactactgatctagttgcactctc |
11145708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 11137228 - 11137393
Alignment:
| Q |
73 |
aggcagatggtcctgactggaaggttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttccagctcctttcaatac |
172 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||| ||||||||||| || ||||||| || |||||| |||||||||| ||||| |||||| | |
|
|
| T |
11137228 |
aggcagatggtcctaattggaaggttcccttaggaagaagggatggtttaaccgccaaccaatcgctcgctaatcaaaatcttccggctccattcaattc |
11137327 |
T |
|
| Q |
173 |
tactgatcaacttaaagctgcatttgctgctcaaggtctcgatactactgatctggttgcactctc |
238 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||||| |
|
|
| T |
11137328 |
gttggatcaacttaaatctgcatttgctgctcaaggcctcagtactactgatctagttgctctctc |
11137393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 11156161 - 11156340
Alignment:
| Q |
59 |
tgatgaaataaaataggcagatggtcctgactggaaggttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttcca |
158 |
Q |
| |
|
||||||||||| | ||||| | |||||| |||| ||||||||||||||||| ||||||||||| ||||||| |||||| ||| |||||||||| |
|
|
| T |
11156161 |
tgatgaaataatacaggcacaaggtcctagttggacagttcctttaggaagaagggatggtttaactgcaaaccggacacttgcaaatcaaaatcttccg |
11156260 |
T |
|
| Q |
159 |
gctcctttcaatactactgatcaacttaaagctgcatttgctgctcaaggtctcgatactactgatctggttgcactctc |
238 |
Q |
| |
|
|| || |||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||||| ||||||||||| |
|
|
| T |
11156261 |
gccccattcaataccttggttcaacttaaagctgcatttactgcccaaggcctgaatactactgatctagttgcactctc |
11156340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 11172362 - 11172441
Alignment:
| Q |
79 |
atggtcctgactggaaggttcctttaggaagaagagatggtttaacagcaaaccaattacttgctaataaaaatcttcca |
158 |
Q |
| |
|
|||||||||| ||||| || || ||||||||||||||| ||||||||||||| | | |||||||||| |||||||||| |
|
|
| T |
11172362 |
atggtcctgattggaaagtgccattaggaagaagagatagtttaacagcaaatctaacccttgctaatataaatcttcca |
11172441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University