View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453_high_7 (Length: 622)
Name: NF11453_high_7
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 43702981 - 43703564
Alignment:
| Q |
18 |
acatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaacattaacagtgagactcaaataatgaacatcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43702981 |
acatcagttctgtaagttccacttagcactcttgtgctcactttttaattctatagagaacaatgaacattaacagtgagactcaaataatgaacatcaa |
43703080 |
T |
|
| Q |
118 |
cagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtttaaactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703081 |
cagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtttaaactt |
43703180 |
T |
|
| Q |
218 |
ggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaatttagttttt |
317 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703181 |
tgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaatttagttttt |
43703280 |
T |
|
| Q |
318 |
gtgaatcaagcaaattctgttgggagaggcatacattgtgtttgatagtatctcgagggattagtctttcaattgcatgcagagaatactttggttt--- |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
43703281 |
gtgaatcaagcaaattctgttgggagaggcctacattgtgtttgatagtatctcgagggattagtctttcaattgcatgcctggaatactttgggtttac |
43703380 |
T |
|
| Q |
415 |
nnnnnnnnnnncaattttataaacttatgttcatctaaaaccacctttatcgaacacttgcccaaatgcacactctttttcgtattgataatgaattact |
514 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43703381 |
caaaaaaaaaacaattttataaacttatgtttatctaaaaccacctttatcgaacacttgcccaaatgcacactttttttcgtattgataatgaattact |
43703480 |
T |
|
| Q |
515 |
tttgttggttcaaccacctacattgaggaatcaaaatactagttgagtttgtcttgtgagattcttatcttgtgattggtccatc |
599 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43703481 |
tttgtt-gttcaaccatctacattgaggaatcaaaatactagttgagtttgtcttgtgagattcttatcttgtgattggtccatc |
43703564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University