View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_71 (Length: 247)
Name: NF11453_high_71
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3014054 - 3014279
Alignment:
| Q |
1 |
atttttcagcacattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctatttt |
100 |
Q |
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| T |
3014054 |
atttttcagcacattttcctgctggtgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctatttt |
3014153 |
T |
|
| Q |
101 |
ggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaacaattcatccttgccttgaat |
200 |
Q |
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| T |
3014154 |
ggttgttgacattatgcatgatgatggcttacacccacatactatagacttactcgatctattaaaactcaccaacaaacaattcatccttgccttgaat |
3014253 |
T |
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| Q |
201 |
aagatcgacatgattcatgactggaa |
226 |
Q |
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| T |
3014254 |
aagatcgacatgattcatgactggaa |
3014279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 593650 - 593533
Alignment:
| Q |
80 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaa |
179 |
Q |
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| T |
593650 |
tctatgtgatatcgcaattttggttgtagacattatgc------atggcatacagcaacaaactatagattcactcgatctattaaaaaggaccaacaca |
593557 |
T |
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| Q |
180 |
caattcatccttgccttgaataag |
203 |
Q |
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| T |
593556 |
gacttcatcattgtcttgaataag |
593533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 182467 - 182507
Alignment:
| Q |
80 |
tctatgtgatattgctattttggttgttgacattatgcatg |
120 |
Q |
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| T |
182467 |
tctatgtgatattgcaattttggttgtagatattatgcatg |
182507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 40672630 - 40672417
Alignment:
| Q |
10 |
cacattttcctgctgttgatgctgaaagacgtatgctggttcttgataacacaccattcaggggcttatatctatgtgatattgctattttggttgttga |
109 |
Q |
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| T |
40672630 |
cacattttcctgctggtgatgctgaaagacgtatgctggttgttgataacgcaccaattaggggttcatatctatgtgatattgctattttggttgttga |
40672531 |
T |
|
| Q |
110 |
cattatgca------tgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaacaattcatccttgccttgaataag |
203 |
Q |
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| T |
40672530 |
cattatgcatgatcatgatgatggcttacaccc---------agactcactcaatctattaaaaactaccaacaaacaattcattgttgccttgaatatg |
40672440 |
T |
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| Q |
204 |
atcgacatgattcatgactggaa |
226 |
Q |
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|||||||||||||| ||||||| |
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| T |
40672439 |
gtcgacatgattcatcactggaa |
40672417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 44605015 - 44605098
Alignment:
| Q |
80 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaat |
169 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| |||||||| | ||| ||||||||||||| |
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| T |
44605015 |
tctatgtgatattgcaattttggttgttgacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaat |
44605098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 44626780 - 44626897
Alignment:
| Q |
80 |
tctatgtgatattgctattttggttgttgacattatgcatgatgatggcttacagccacatactatagacttacttgatctattaaaaatcaccaacaaa |
179 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||| |||||||| | ||| ||||||||||||| | |||| |
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| T |
44626780 |
tctatgtgatattgcaattttggttgtggacattatgc------atggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacact |
44626873 |
T |
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| Q |
180 |
caattcatccttgccttgaataag |
203 |
Q |
| |
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|||||||| |||| ||||||||| |
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| T |
44626874 |
gaattcatcgttgcattgaataag |
44626897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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