View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_high_86 (Length: 235)

Name: NF11453_high_86
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_high_86
NF11453_high_86
[»] chr7 (17 HSPs)
chr7 (2-65)||(36905721-36905784)
chr7 (1-65)||(19072963-19073027)
chr7 (1-75)||(4612080-4612154)
chr7 (1-77)||(47713493-47713569)
chr7 (2-65)||(31110820-31110883)
chr7 (1-65)||(31466361-31466425)
chr7 (1-65)||(34478011-34478075)
chr7 (1-65)||(48531516-48531580)
chr7 (3-70)||(37950943-37951010)
chr7 (1-65)||(10464118-10464182)
chr7 (1-61)||(23473976-23474036)
chr7 (1-65)||(36819890-36819954)
chr7 (1-65)||(36859211-36859275)
chr7 (1-65)||(42834295-42834359)
chr7 (1-65)||(47081174-47081238)
chr7 (1-43)||(44479746-44479788)
chr7 (1-65)||(37231566-37231630)
[»] chr5 (20 HSPs)
chr5 (2-65)||(29627463-29627526)
chr5 (1-70)||(32334636-32334705)
chr5 (1-62)||(5364618-5364679)
chr5 (1-65)||(32002017-32002081)
chr5 (1-65)||(39894975-39895039)
chr5 (1-65)||(14475233-14475297)
chr5 (2-62)||(40512686-40512746)
chr5 (1-65)||(5212925-5212989)
chr5 (1-68)||(39036604-39036671)
chr5 (1-65)||(4299836-4299900)
chr5 (1-65)||(22613712-22613776)
chr5 (1-65)||(35448000-35448064)
chr5 (1-65)||(37843578-37843642)
chr5 (1-65)||(42148501-42148565)
chr5 (1-61)||(43067415-43067475)
chr5 (1-63)||(35290480-35290542)
chr5 (24-65)||(970355-970396)
chr5 (1-70)||(37516339-37516408)
chr5 (1-61)||(16048279-16048339)
chr5 (1-65)||(38698157-38698221)
[»] chr6 (13 HSPs)
chr6 (1-65)||(643434-643498)
chr6 (1-62)||(25435605-25435666)
chr6 (1-65)||(11114759-11114823)
chr6 (1-65)||(8796243-8796307)
chr6 (1-62)||(18992097-18992158)
chr6 (1-65)||(16696019-16696083)
chr6 (9-65)||(22020478-22020534)
chr6 (1-65)||(31855012-31855076)
chr6 (1-65)||(20662062-20662126)
chr6 (1-65)||(30237361-30237425)
chr6 (1-65)||(7097876-7097940)
chr6 (1-65)||(25163358-25163422)
chr6 (33-65)||(31854821-31854853)
[»] chr3 (22 HSPs)
chr3 (1-65)||(38833857-38833921)
chr3 (1-71)||(54840125-54840195)
chr3 (1-70)||(21907190-21907259)
chr3 (1-65)||(10571147-10571211)
chr3 (1-65)||(45167493-45167557)
chr3 (1-69)||(47638249-47638317)
chr3 (1-75)||(29728091-29728165)
chr3 (3-65)||(48706849-48706911)
chr3 (1-62)||(17053058-17053119)
chr3 (1-65)||(51062584-51062648)
chr3 (1-51)||(38492245-38492295)
chr3 (18-71)||(10435330-10435383)
chr3 (1-65)||(7459823-7459887)
chr3 (1-65)||(8559008-8559072)
chr3 (1-65)||(18659246-18659310)
chr3 (9-65)||(34827455-34827511)
chr3 (1-64)||(35717859-35717922)
chr3 (9-74)||(46483750-46483815)
chr3 (1-61)||(1327506-1327566)
chr3 (1-65)||(32951139-32951203)
chr3 (1-65)||(37833094-37833158)
chr3 (1-65)||(52668489-52668553)
[»] chr8 (23 HSPs)
chr8 (1-65)||(3293104-3293168)
chr8 (1-65)||(2986519-2986583)
chr8 (1-65)||(13138135-13138199)
chr8 (1-65)||(30380724-30380788)
chr8 (1-65)||(38739851-38739915)
chr8 (1-65)||(38845801-38845865)
chr8 (1-68)||(40013845-40013912)
chr8 (1-65)||(8350883-8350947)
chr8 (1-61)||(37710093-37710153)
chr8 (2-51)||(6470631-6470680)
chr8 (1-65)||(2805479-2805543)
chr8 (1-65)||(14522573-14522637)
chr8 (1-65)||(18809470-18809534)
chr8 (1-65)||(23249046-23249110)
chr8 (1-65)||(30290118-30290182)
chr8 (1-65)||(43066320-43066384)
chr8 (13-65)||(45082018-45082070)
chr8 (3-65)||(6471041-6471103)
chr8 (1-51)||(45253940-45253990)
chr8 (3-60)||(39361321-39361378)
chr8 (33-65)||(2805702-2805734)
chr8 (1-65)||(29791136-29791200)
chr8 (33-65)||(38739660-38739692)
[»] chr1 (22 HSPs)
chr1 (1-65)||(32988352-32988416)
chr1 (1-65)||(50539454-50539518)
chr1 (1-61)||(1849895-1849955)
chr1 (1-65)||(38458924-38458988)
chr1 (1-65)||(25531972-25532036)
chr1 (1-65)||(30529053-30529117)
chr1 (1-65)||(49805255-49805319)
chr1 (1-65)||(52379183-52379247)
chr1 (1-68)||(16751453-16751520)
chr1 (3-65)||(45234852-45234914)
chr1 (1-70)||(48264809-48264878)
chr1 (1-65)||(3898574-3898638)
chr1 (1-65)||(16265227-16265291)
chr1 (1-65)||(16266356-16266420)
chr1 (1-65)||(26441828-26441892)
chr1 (1-65)||(39354267-39354331)
chr1 (1-65)||(43680264-43680328)
chr1 (1-65)||(50876558-50876622)
chr1 (1-65)||(23569677-23569741)
chr1 (1-65)||(37281286-37281350)
chr1 (1-61)||(42708694-42708754)
chr1 (65-93)||(46730311-46730339)
[»] chr4 (30 HSPs)
chr4 (1-70)||(19525712-19525781)
chr4 (1-65)||(4209553-4209617)
chr4 (1-65)||(5744086-5744150)
chr4 (1-65)||(7738822-7738886)
chr4 (1-76)||(55190558-55190633)
chr4 (1-70)||(4264328-4264397)
chr4 (1-61)||(6494784-6494844)
chr4 (1-65)||(25644553-25644617)
chr4 (5-61)||(42187007-42187063)
chr4 (1-65)||(46212353-46212417)
chr4 (2-65)||(1377226-1377289)
chr4 (1-51)||(3443404-3443454)
chr4 (1-63)||(5123162-5123224)
chr4 (3-65)||(18359976-18360038)
chr4 (3-65)||(36602890-36602952)
chr4 (1-65)||(3442347-3442411)
chr4 (1-65)||(5735465-5735529)
chr4 (3-63)||(39260137-39260197)
chr4 (1-65)||(47579480-47579544)
chr4 (18-65)||(45198343-45198390)
chr4 (1-63)||(20678593-20678655)
chr4 (3-65)||(23603650-23603712)
chr4 (3-65)||(28152187-28152249)
chr4 (2-63)||(19652261-19652322)
chr4 (1-65)||(19170542-19170606)
chr4 (1-65)||(26205707-26205771)
chr4 (33-65)||(28151994-28152026)
chr4 (1-65)||(39786360-39786424)
chr4 (1-65)||(46803826-46803890)
chr4 (1-61)||(49768639-49768699)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-65)||(15219-15283)
[»] chr2 (19 HSPs)
chr2 (1-65)||(4045236-4045300)
chr2 (1-65)||(27559769-27559833)
chr2 (1-65)||(32775906-32775970)
chr2 (1-65)||(34827106-34827170)
chr2 (1-65)||(7442894-7442958)
chr2 (1-61)||(30708922-30708982)
chr2 (1-65)||(40425252-40425316)
chr2 (1-65)||(42038717-42038781)
chr2 (9-65)||(44330586-44330642)
chr2 (1-62)||(36198957-36199018)
chr2 (1-65)||(9877086-9877150)
chr2 (1-65)||(44283282-44283346)
chr2 (3-70)||(18718435-18718502)
chr2 (2-61)||(24282967-24283026)
chr2 (9-51)||(41463534-41463576)
chr2 (1-70)||(23671570-23671639)
chr2 (1-65)||(14372271-14372335)
chr2 (13-65)||(14707538-14707590)
chr2 (33-69)||(14707760-14707796)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-60)||(12946-13005)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-60)||(10587-10646)
scaffold0366 (1-60)||(14253-14312)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-69)||(117515-117583)
[»] scaffold0340 (1 HSPs)
scaffold0340 (2-51)||(14533-14582)
[»] scaffold0092 (1 HSPs)
scaffold0092 (1-61)||(44115-44175)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 36905721 - 36905784
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  36905721 gtcaaagtatgtcaagtcaattatgtatattgtcaactgggtcatttatttagggacggaggga 36905784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19072963 - 19073027
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||    
T  19072963 ggtcaaagtatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggacggaggga 19073027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4612154 - 4612080
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatcaaata 75  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| || ||||||    
T  4612154 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggagtaccaaata 4612080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 47713569 - 47713493
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatcaaataat 77  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||| |||||| ||||| |||||    
T  47713569 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacagagggagtatcagataat 47713493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 31110820 - 31110883
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||| ||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||||    
T  31110820 gtcaaagtatttcaagtcaattatgtatattgtcaactggatcatttatttagggacggaggga 31110883  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31466425 - 31466361
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  31466425 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggaggga 31466361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34478075 - 34478011
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||||| |||||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  34478075 ggtcaaagtatgttaaatcaataatgtatattgtcaactaggtcatttattgagggacggaggga 34478011  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48531516 - 48531580
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  48531516 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 48531580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 37951010 - 37950943
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||||| |||| ||||| ||| |||||||||||| ||||||||||| | ||||||||||| ||||    
T  37951010 tcaaaatatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatc 37950943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 10464182 - 10464118
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  10464182 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 10464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23474036 - 23473976
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||||| || ||||| |||||||||||||||| ||||||||||| | |||||||    
T  23474036 ggtcaaagtatgtaaagtcaataatgtatattgtcaactaggtcatttattaagggacgga 23473976  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36819890 - 36819954
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  36819890 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 36819954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36859275 - 36859211
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||||||||| ||| ||||||||||||  |||||||||| | |||||||||||    
T  36859275 ggtcaaagtatatcaaatcaataatgcatattgtcaactaagtcatttattaagggacggaggga 36859211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42834359 - 42834295
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||||||||| ||| |||||||| ||| ||||||||||| | |||||||||||    
T  42834359 ggtcaaagtatatcaaatcaataatgcatattgtcgactaggtcatttattaagggacggaggga 42834295  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47081174 - 47081238
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  47081174 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 47081238  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44479788 - 44479746
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggt 43  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||    
T  44479788 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggt 44479746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37231630 - 37231566
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| |||| |||||| | |||||||||||    
T  37231630 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcgtttattgagggacggaggga 37231566  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 29627463 - 29627526
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  29627463 gtcaaagtatgtcaagtcaattatgtatattgtcaactgggtcatttatttagggacggaggga 29627526  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32334705 - 32334636
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||    
T  32334705 ggtcaaagtatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggacggagggagtatc 32334636  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5364618 - 5364679
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||    
T  5364618 ggtcaaaatatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggag 5364679  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32002081 - 32002017
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  32002081 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggaggga 32002017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39894975 - 39895039
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  39894975 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggaggga 39895039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14475297 - 14475233
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||| |||| |||||||||||||    
T  14475297 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattgaaggacggaggga 14475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 40512746 - 40512686
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||| | ||||||||    
T  40512746 gtcaaagtatgtcaaatcaataatgtatattgtcaactgagtcatttattaagggacggag 40512686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5212989 - 5212925
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| |  ||||||||||    
T  5212989 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagagacggaggga 5212925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39036604 - 39036671
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaata 68  Q
    ||||||| |||| ||| ||||| |||||||||||||||| |||||| |||| | ||||||||||||||    
T  39036604 ggtcaaagtatgacaagtcaataatgtatattgtcaactaggtcatctattaagggacggagggaata 39036671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4299900 - 4299836
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  4299900 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 4299836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 22613776 - 22613712
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  22613776 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 22613712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35448064 - 35448000
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  35448064 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 35448000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37843642 - 37843578
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||| | |||||| |||| | |||||||||||    
T  37843642 ggtcaaagtatgtcaagtcaataatgtatattgtcaagtaggtcatctattgagggacggaggga 37843578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42148501 - 42148565
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  42148501 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 42148565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43067415 - 43067475
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| | |||||||| |||||||||||||||| ||||||||||| | |||||||    
T  43067415 ggtcaaagtatattaaatcaataatgtatattgtcaactaggtcatttattgagggacgga 43067475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35290480 - 35290542
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagg 63  Q
    ||||||| |||| ||| ||||| |||||||||||||||| |||||| |||| | |||||||||    
T  35290480 ggtcaaagtatgacaagtcaataatgtatattgtcaactaggtcatctattaagggacggagg 35290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 970355 - 970396
Alignment:
Q  24 atgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||||||||| | |||||||||||    
T  970355 atgtatattgtcaactaggtcatttattgagggacggaggga 970396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37516339 - 37516408
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| ||| |||| ||||| |||||||||||||||| ||| || |||| | ||||||||| ||||||    
T  37516339 ggtcaaagtatatcaagtcaataatgtatattgtcaactaggttatctattaagggacggaggaaatatc 37516408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 16048279 - 16048339
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||    
T  16048279 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacgga 16048339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38698157 - 38698221
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| ||||||||||||  |||||||||| | |||||||||||    
T  38698157 ggtcaaagtatatcaagtcaataatgcatattgtcaactaagtcatttattaagggacggaggga 38698221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 643498 - 643434
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  643498 ggtcaaagtatgtcaagtcaattatgtatattgtcaactgagtcatttatttagggacggaggga 643434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25435605 - 25435666
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||||||||    
T  25435605 ggtcaaagtatgtcaaatcaataatgtatattgtcaactgggtcatttattaagggacggag 25435666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11114759 - 11114823
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||| |  ||||||||||    
T  11114759 ggtcaaaatatgtcaaatcaataatgtatattgtcaactggatcatttattaagagacggaggga 11114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8796243 - 8796307
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||||| || ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  8796243 ggtcaaagtatgttaagtcaataatgtatattgtcaactgggtcatttattaagggacggaggga 8796307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18992097 - 18992158
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | ||||||||    
T  18992097 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggag 18992158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 16696083 - 16696019
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  16696083 ggtcaaagtatgtcaagtcaatgatgtatattgtcaactaggtcatctattgagggacggaggga 16696019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 22020478 - 22020534
Alignment:
Q  9 tatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||| ||||| |||||||||||||||||||||||||| | | |||||||||||    
T  22020478 tatgtcaagtcaataatgtatattgtcaactgggtcatttaataagggacggaggga 22020534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31855012 - 31855076
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| | ||||||||||||||| |||||||||| | |||||||||||    
T  31855012 ggtcaaagtatgtcaagtcaataacgtatattgtcaactgagtcatttattaagggacggaggga 31855076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 20662126 - 20662062
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  20662126 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 20662062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30237361 - 30237425
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| ||||||||||||||||  |||||||||| | ||||| |||||    
T  30237361 ggtcaaagtatgtcaagtcaataatgtatattgtcaactatgtcatttattaagggacgaaggga 30237425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7097940 - 7097876
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||||| || ||||| || ||||||||||||||  ||||||||| | |||||||||||    
T  7097940 ggtcaaagtatgttaagtcaataatctatattgtcaactgaatcatttattaagggacggaggga 7097876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25163358 - 25163422
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| ||||||||||||||||  |||||||||| | |||||||||||    
T  25163358 ggtcaaagtatattaagtcaataatgtatattgtcaactatgtcatttattgagggacggaggga 25163422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 31854853 - 31854821
Alignment:
Q  33 gtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||||||||||||||||| |||||||||||    
T  31854853 gtcaactgggtcatttatttagggacggaggga 31854821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38833857 - 38833921
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  38833857 ggtcaaaatatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggaggga 38833921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 54840195 - 54840125
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatca 71  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||| |||||    
T  54840195 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggagggagtatca 54840125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21907190 - 21907259
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||||||| | ||||||||||| ||||    
T  21907190 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggacggagggagtatc 21907259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 10571211 - 10571147
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||| ||||||| | |||||||||||    
T  10571211 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggttatttattaagggacggaggga 10571147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45167493 - 45167557
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||| |||| | |||||||||||    
T  45167493 ggtcaaaatatgtcaagtcaataatgtatattgtcaactggatcatatattaagggacggaggga 45167557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47638249 - 47638317
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatat 69  Q
    ||||||| |||||||||||||| |||||||||||||| | |||||| |||| | |||||||||||||||    
T  47638249 ggtcaaagtatgtcaaatcaataatgtatattgtcaattaggtcatctattaagggacggagggaatat 47638317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29728165 - 29728091
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatcaaata 75  Q
    ||||||||||| |||| ||||| |||||||||||||||| | ||||||||| | ||||||||||| ||| |||||    
T  29728165 ggtcaaaatatctcaagtcaataatgtatattgtcaactagatcatttattaagggacggagggagtattaaata 29728091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 48706911 - 48706849
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||| ||||| || ||||||||||||||| ||||||||| | |||||||||||    
T  48706911 tcaaaatatgtcaagtcaataatatatattgtcaactggatcatttattaagggacggaggga 48706849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17053058 - 17053119
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    ||||||| ||| | |||||||| |||||||||||||||||||||||||||| | ||||||||    
T  17053058 ggtcaaagtatattaaatcaataatgtatattgtcaactgggtcatttattgagggacggag 17053119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51062584 - 51062648
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| ||||||||| ||||||| |||||||||| | |||||||||||    
T  51062584 ggtcaaagtatgtcaagtcaataatgtatattatcaactgagtcatttattaagggacggaggga 51062648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 38492245 - 38492295
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    ||||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  38492245 ggtcaaagtatgttaaatcaataatgtatattgtcaactaggtcatttatt 38492295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10435330 - 10435383
Alignment:
Q  18 tcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatca 71  Q
    ||||| |||||||||||||||| ||||||||||| | ||||||||||| |||||    
T  10435330 tcaataatgtatattgtcaactaggtcatttattgagggacggagggagtatca 10435383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7459887 - 7459823
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  7459887 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 7459823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8559072 - 8559008
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  8559072 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 8559008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18659246 - 18659310
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  18659246 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 18659310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 34827455 - 34827511
Alignment:
Q  9 tatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||| ||||| || ||||||||||||| ||||||||||| | |||||||||||    
T  34827455 tatgtcaagtcaataatatatattgtcaactaggtcatttattaagggacggaggga 34827511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 35717922 - 35717859
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggg 64  Q
    ||||||||||||| || ||||| |||||||||||||| |  ||||| |||| ||||||||||||    
T  35717922 ggtcaaaatatgttaagtcaataatgtatattgtcaaatacgtcatctattgaaggacggaggg 35717859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 46483750 - 46483815
Alignment:
Q  9 tatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatcaaat 74  Q
    |||||||||||||| |||||||||||||||| | |||| |||| | |||| |||||| || |||||    
T  46483750 tatgtcaaatcaataatgtatattgtcaactagatcatctattaagggacagagggagtaccaaat 46483815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1327506 - 1327566
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||    
T  1327506 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgga 1327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32951203 - 32951139
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| | ||||||||| | |||||||||||    
T  32951203 ggtcaaagtatattaagtcaataatgtatattgtcaactagatcatttattgagggacggaggga 32951139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37833094 - 37833158
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| ||||||| |||| ||||||||||| | |||||||||||    
T  37833094 ggtcaaagtatatcaagtcaataatgcatattgttaactaggtcatttattaagggacggaggga 37833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52668553 - 52668489
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||| ||||||| | |||||||||||    
T  52668553 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtgatttattaagggacggaggga 52668489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3293168 - 3293104
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||    
T  3293168 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacggaggga 3293104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2986519 - 2986583
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||| ||||||||||||||||  |||||||||| | |||||||||||    
T  2986519 ggtcaaaatatgtcaagtcaataatgtatattgtcaactaagtcatttattaagggacggaggga 2986583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13138199 - 13138135
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||| ||||||||| |||||| |||||| |||| |||||||||||||    
T  13138199 ggtcaaaatatgtcaagtcaataatgtatattatcaactaggtcatctattaaaggacggaggga 13138135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30380724 - 30380788
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||| ||||||||| | |||||||||||    
T  30380724 ggtcaaagtatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggaggga 30380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38739851 - 38739915
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||| || |||||||||||||||||||||||||   |||||||||||    
T  38739851 ggtcaaagtatgtcaaatcaataatatatattgtcaactgggtcatttattaccggacggaggga 38739915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38845801 - 38845865
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||  |||||||||||||||||||||||||||| | |||||||||||    
T  38845801 ggtcaaagtatgtcaagtcaacaatgtatattgtcaactgggtcatttattaagggacggaggga 38845865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40013845 - 40013912
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaata 68  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||||| | | ||||||||||||||    
T  40013845 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgagtcatttactaagggacggagggaata 40013912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8350947 - 8350883
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | ||| |||||||    
T  8350947 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggatggaggga 8350883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37710093 - 37710153
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||||||| | |||||||    
T  37710093 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggacgga 37710153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 6470680 - 6470631
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    |||||||||| |||||||||| |||||||||||||||| |||||| ||||    
T  6470680 gtcaaaatatctcaaatcaataatgtatattgtcaactaggtcatctatt 6470631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2805543 - 2805479
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  2805543 ggtcaaagtatatcaagtcaatgatgcatattgtcaactaggtcatttattaagggacggaggga 2805479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14522573 - 14522637
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  14522573 ggtcaaagtatatcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 14522637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18809470 - 18809534
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  18809470 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 18809534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23249046 - 23249110
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  23249046 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 23249110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30290118 - 30290182
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  30290118 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 30290182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43066320 - 43066384
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| |||||||||||| ||| ||||||||||| | |||||||||||    
T  43066320 ggtcaaagtatatcaagtcaataatgtatattgtcgactaggtcatttattaagggacggaggga 43066384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 45082018 - 45082070
Alignment:
Q  13 tcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  45082018 tcaaatcaataatgcatattgtcaactaggtcatttattaagggacggaggga 45082070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 6471041 - 6471103
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||| ||||||    
T  6471041 tcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacagaggga 6471103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 45253940 - 45253990
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||| ||||    
T  45253940 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctatt 45253990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39361321 - 39361378
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgg 60  Q
    ||||| ||| |||||||||| ||| |||||||||||| ||||||||||| | ||||||    
T  39361321 tcaaagtatatcaaatcaataatgcatattgtcaactaggtcatttattaagggacgg 39361378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 2805702 - 2805734
Alignment:
Q  33 gtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||||||||||||||||| |||||||||||    
T  2805702 gtcaactgggtcatttatttagggacggaggga 2805734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29791136 - 29791200
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | ||||| |||||    
T  29791136 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgtaggga 29791200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 38739692 - 38739660
Alignment:
Q  33 gtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||||||||||||||    
T  38739692 gtcaactaggtcatttatttaaggacggaggga 38739660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32988416 - 32988352
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||||| | |||||||||||    
T  32988416 ggtcaaaatatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacggaggga 32988352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50539454 - 50539518
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||    
T  50539454 ggtcaaagtatgtcaagtcaattatgtatattgtcaactgagtcatttattaagggacggaggga 50539518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1849895 - 1849955
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | |||||||    
T  1849895 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacgga 1849955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38458924 - 38458988
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||| |||||||    
T  38458924 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggatggaggga 38458988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25531972 - 25532036
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  25531972 ggtcaaagtatatcaagtcaataatgtatattgtcaactaggtcatttattaagggacggaggga 25532036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30529117 - 30529053
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  30529117 ggtcaaattatctcaagtcaataatgtatattgtcaactaggtcatttattaagggacggaggga 30529053  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 49805319 - 49805255
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||  |||||||||||||||||||||||||||| | | |||||||||    
T  49805319 ggtcaaagtatgtcaagtcaacaatgtatattgtcaactgggtcatttattaaggaacggaggga 49805255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52379183 - 52379247
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| |||||||||||||    
T  52379183 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaaaggacggaggga 52379247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16751520 - 16751453
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaata 68  Q
    ||||||||||||| || ||||| |||||||||||||||| |||||| |||| |||||| || ||||||    
T  16751520 ggtcaaaatatgttaagtcaataatgtatattgtcaactaggtcatgtattgaaggacagatggaata 16751453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 45234914 - 45234852
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||||| ||| |||||||||||||||| ||||||||||| |  ||||||||||    
T  45234914 tcaaagtatgtcaaattaataatgtatattgtcaactaggtcatttattaagagacggaggga 45234852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48264878 - 48264809
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | ||||||||||| ||||    
T  48264878 ggtcaaagtatatcaactcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatc 48264809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3898638 - 3898574
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  3898638 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 3898574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16265227 - 16265291
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  16265227 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 16265291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16266356 - 16266420
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  16266356 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 16266420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26441828 - 26441892
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  26441828 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 26441892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39354331 - 39354267
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||||||| |||| ||||| ||| ||| |||||||| ||||||||||| | |||||||||||    
T  39354331 ggtcaaaatatatcaagtcaataatgcatactgtcaactaggtcatttattaagggacggaggga 39354267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43680264 - 43680328
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  43680264 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgagggacggaggga 43680328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50876558 - 50876622
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  50876558 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 50876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23569741 - 23569677
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| || ||||| ||||| || |||||||||||   ||||||||||||| |||||||||||    
T  23569741 ggtcaaagtacgtcaagtcaataatatatattgtcaaacaggtcatttatttagggacggaggga 23569677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37281286 - 37281350
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| || ||||||||||||| | |||| |||| | |||||||||||    
T  37281286 ggtcaaagtatgtcaagtcaataatatatattgtcaactagatcatctattaagggacggaggga 37281350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 42708694 - 42708754
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||    
T  42708694 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgga 42708754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 46730311 - 46730339
Alignment:
Q  65 aatatcaaataatggatgggcataatttt 93  Q
    |||||||||||||||||||||||||||||    
T  46730311 aatatcaaataatggatgggcataatttt 46730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19525781 - 19525712
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| ||||| || ||||| |||||||||||||||| ||||||||||| | ||||||||||||||||    
T  19525781 ggtcaaagtatgttaagtcaatgatgtatattgtcaactaggtcatttattgagggacggagggaatatc 19525712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 4209553 - 4209617
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  4209553 ggtcaaagtatgtcaaatcaataatgtatattgtcaactaggtcatctattaagggacggaggga 4209617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5744150 - 5744086
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||  |||||||||||||||||||||||||||| | |||||||||||    
T  5744150 ggtcaaagtatgtcaagtcaaaaatgtatattgtcaactgggtcatttattaagggacggaggga 5744086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7738886 - 7738822
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  7738886 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggaggga 7738822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 55190633 - 55190558
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatcaaataa 76  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||| || |||| | ||||||||||| ||||||||||    
T  55190633 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggttatctattaagggacggagggagtatcaaataa 55190558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4264328 - 4264397
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| |||||||| ||||| ||||||||||||||||  |||||||||| | ||||||||||| ||||    
T  4264328 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaagtcatttattaagggacggagggagtatc 4264397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6494784 - 6494844
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||||| || ||||| |||||||||||||||||||||||||||| | |||||||    
T  6494784 ggtcaaagtatgttaagtcaataatgtatattgtcaactgggtcatttattaagggacgga 6494844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25644553 - 25644617
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| | || ||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  25644553 ggtcaaagtatattaagtcaataatgtatattgtcaactaggtcatttattgaaggacggaggga 25644617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 42187063 - 42187007
Alignment:
Q  5 aaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    |||||||||||| ||||| |||||||||||||||| |||||| |||| |||||||||    
T  42187063 aaaatatgtcaagtcaataatgtatattgtcaactaggtcatctattaaaggacgga 42187007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 46212417 - 46212353
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||||||| | ||| |||||||    
T  46212417 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgagtcatttattaagggatggaggga 46212353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 1377226 - 1377289
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||| |||||||| ||||| |||||||||||||||||| ||||||||| | |||| ||||||    
T  1377226 gtcaaagtatgtcaagtcaataatgtatattgtcaactggatcatttattaagggacagaggga 1377289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3443454 - 3443404
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||||||||    
T  3443454 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttatt 3443404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 5123224 - 5123162
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagg 63  Q
    ||||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||    
T  5123224 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagg 5123162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 18360038 - 18359976
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  18360038 tcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 18359976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 36602890 - 36602952
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||||    
T  36602890 tcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggaggga 36602952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3442411 - 3442347
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  3442411 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 3442347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5735465 - 5735529
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  5735465 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 5735529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 39260197 - 39260137
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagg 63  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| |||| | |||||||||    
T  39260197 tcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattaagggacggagg 39260137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47579480 - 47579544
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  47579480 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 47579544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 45198390 - 45198343
Alignment:
Q  18 tcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  45198390 tcaataatgtatattgtcaactaggtcatttattaagggacggaggga 45198343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 20678655 - 20678593
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagg 63  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||    
T  20678655 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagg 20678593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 23603712 - 23603650
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| |||||||| ||||| |||||||||||||||| |||||| |||| | | |||||||||    
T  23603712 tcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatctattgaggaacggaggga 23603650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 28152187 - 28152249
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  28152187 tcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 28152249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 19652322 - 19652261
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagg 63  Q
    |||||| |||||||| ||||| |||||||||||||||| | |||| |||| | |||||||||    
T  19652322 gtcaaagtatgtcaagtcaataatgtatattgtcaactagatcatctattaagggacggagg 19652261  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19170606 - 19170542
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| || ||||| ||||| || |||||||||||   ||||||||||||| |||||||||||    
T  19170606 ggtcaaagtacgtcaagtcaataatatatattgtcaaacaggtcatttatttagggacggaggga 19170542  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26205771 - 26205707
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| ||||||||||||  |||||||||| | |||||||||||    
T  26205771 ggtcaaagtatatcaagtcaataatgcatattgtcaactaagtcatttattaagggacggaggga 26205707  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 28152026 - 28151994
Alignment:
Q  33 gtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||||||||||||||    
T  28152026 gtcaactaggtcatttatttaaggacggaggga 28151994  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39786424 - 39786360
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||||||||| || |||||||||||||  ||||| |||| | ||||| |||||    
T  39786424 ggtcaaagtatgtcaaatcaataatatatattgtcaactaagtcatctattaagggacgaaggga 39786360  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 46803826 - 46803890
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||| ||||||    
T  46803826 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacagaggga 46803890  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49768639 - 49768699
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||    
T  49768639 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgga 49768699  T

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Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15283 - 15219
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| ||||||||||| | |||||||||||    
T  15283 ggtcaaagtatgtcaagtcaataatgtatattgtcaactaggtcatttattaagggacggaggga 15219  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4045300 - 4045236
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||||||||||| ||||  |||||||||||||| ||||||||||||| | |||||||||||    
T  4045300 ggtcaaaatatgtcaagtcaacaatgtatattgtcaaatgggtcatttattaagggacggaggga 4045236  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27559769 - 27559833
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||  |||||||||||||||||||||||||||| | |||||||||||    
T  27559769 ggtcaaagtatgtcaagtcaaaaatgtatattgtcaactgggtcatttattaagggacggaggga 27559833  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32775970 - 32775906
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||| |||| | |||||||||||    
T  32775970 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatctattgagggacggaggga 32775906  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34827106 - 34827170
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| || ||||||||||||||||||||||||| | |||||||||||    
T  34827106 ggtcaaagtatgtcaagtcaataatatatattgtcaactgggtcatttattaagggacggaggga 34827170  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7442958 - 7442894
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||| | ||||||||| | |||||||||||    
T  7442958 ggtcaaagtatgtcaagtcaataatgtatattgtcaactagatcatttattaagggacggaggga 7442894  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30708922 - 30708982
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||||||| |||| ||||| |||||||||||||||| ||||||||||| | |||||||    
T  30708922 ggtcaaaatatatcaagtcaataatgtatattgtcaactaggtcatttattaagggacgga 30708982  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40425316 - 40425252
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||||||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  40425316 ggtcaaagtatatcaaatcaataatgcatattgtcaactaggtcatttattaagggacggaggga 40425252  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42038717 - 42038781
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||  ||||||||| | |||||||||||    
T  42038717 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgaatcatttattaagggacggaggga 42038781  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 44330586 - 44330642
Alignment:
Q  9 tatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||||||| ||||| |||||||||||||||||||||||||| | | |||||||||||    
T  44330586 tatgtcaagtcaataatgtatattgtcaactgggtcatttaataagggacggaggga 44330642  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36199018 - 36198957
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggag 62  Q
    ||||||| ||| |||||||||| ||| |||||||||||| ||||||||||| | ||||||||    
T  36199018 ggtcaaagtatatcaaatcaataatgcatattgtcaactaggtcatttattaagggacggag 36198957  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9877150 - 9877086
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| |||||||| ||||| |||||||||||||| | |||||| |||| | |||||||||||    
T  9877150 ggtcaaagtatgtcaagtcaataatgtatattgtcaattaggtcatctattaagggacggaggga 9877086  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 44283346 - 44283282
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  44283346 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 44283282  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 18718435 - 18718502
Alignment:
Q  3 tcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | ||||||||||| ||||    
T  18718435 tcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatc 18718502  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 24283026 - 24282967
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||||||||||||||||| || ||||||||||||| | |||| |||| | |||||||    
T  24283026 gtcaaaatatgtcaaatcaataatatatattgtcaactagatcatctattgagggacgga 24282967  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 41463576 - 41463534
Alignment:
Q  9 tatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    |||||||||||||| |||||||||||||||| | |||||||||    
T  41463576 tatgtcaaatcaataatgtatattgtcaactagatcatttatt 41463534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23671570 - 23671639
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatatc 70  Q
    ||||||| |||  ||| ||||| ||| |||||||||||| ||||||||||| | ||||||||||| ||||    
T  23671570 ggtcaaagtataccaagtcaataatgcatattgtcaactaggtcatttattaagggacggagggagtatc 23671639  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14372271 - 14372335
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    ||||||| ||| |||| ||||| ||| |||||||||| | ||||||||||| | |||||||||||    
T  14372271 ggtcaaagtatatcaagtcaataatgcatattgtcaattaggtcatttattaagggacggaggga 14372335  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 14707590 - 14707538
Alignment:
Q  13 tcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggaggga 65  Q
    |||| ||||| ||| |||||||||||| ||||||||||| | |||||||||||    
T  14707590 tcaagtcaataatgcatattgtcaactaggtcatttattaagggacggaggga 14707538  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 14707760 - 14707796
Alignment:
Q  33 gtcaactgggtcatttatttaaggacggagggaatat 69  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  14707760 gtcaactaggtcatttatttagggacggagggaatat 14707796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12946 - 13005
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgg 60  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  12946 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacgg 13005  T

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Target: scaffold0366 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10587 - 10646
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgg 60  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  10587 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacgg 10646  T

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Target: scaffold0366; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14253 - 14312
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgg 60  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||||||||| | ||||||    
T  14253 ggtcaaagtatgtcaagtcaataatgtatattgtcaactgggtcatttattaagggacgg 14312  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 117515 - 117583
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacggagggaatat 69  Q
    ||||||| ||| |||| ||||| ||  |||||||||||| ||||||||||| | |||||||||||||||    
T  117515 ggtcaaagtatatcaagtcaataatacatattgtcaactaggtcatttattaagggacggagggaatat 117583  T

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Target: scaffold0340 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 14533 - 14582
Alignment:
Q  2 gtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatt 51  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||| ||||    
T  14533 gtcaaagtatatcaaatcaataatgtatattgtcaactaggtcatctatt 14582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44175 - 44115
Alignment:
Q  1 ggtcaaaatatgtcaaatcaattatgtatattgtcaactgggtcatttatttaaggacgga 61  Q
    ||||||| ||| |||| ||||| ||| |||||||||||| ||||||||||| | |||||||    
T  44175 ggtcaaagtatatcaagtcaataatgcatattgtcaactaggtcatttattaagggacgga 44115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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