View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_93 (Length: 219)
Name: NF11453_high_93
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_93 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 25382105 - 25382281
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
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||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25382105 |
aagcaaaggggttcaagg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctc |
25382203 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
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| T |
25382204 |
cacctaaagaaaaaagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactg |
25382281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 11473992 - 11474168
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
11473992 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
11474090 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11474091 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactg |
11474168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 50019627 - 50019454
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
50019627 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctc |
50019529 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtga |
182 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50019528 |
cacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtga |
50019454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 28246044 - 28245883
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
28246044 |
aagcaaaggggttcaggg-tacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctccaccta--------- |
28245955 |
T |
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| Q |
114 |
cagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
28245954 |
aagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
28245883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 38252874 - 38252698
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
38252874 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
38252776 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
| |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
38252775 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
38252698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 43156668 - 43156844
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
43156668 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
43156766 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
43156767 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
43156844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 19307736 - 19307560
Alignment:
| Q |
14 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
113 |
Q |
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|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
19307736 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctc |
19307638 |
T |
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| Q |
114 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
185 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
19307637 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactg |
19307560 |
T |
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