View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_high_97 (Length: 211)
Name: NF11453_high_97
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_high_97 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 28673859 - 28674041
Alignment:
| Q |
13 |
agatgaatgaaatcattaaatctatttgcaacctttaagcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacaca |
112 |
Q |
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| T |
28673859 |
agatgaatgaaatcattaaatctatttgcaacctt-aatcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacaca |
28673957 |
T |
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| Q |
113 |
cctaacttttgagttgattttatgtgcaaatgtttatttctttgctgtaataaatcaaagaataagaaggtgtcttatggatca |
196 |
Q |
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| T |
28673958 |
cctaacttttgggttgattttatgtataaatgtttatttatttgctgtaataaatcaaagaataagaaggtgtcttatggatca |
28674041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 28696074 - 28696256
Alignment:
| Q |
13 |
agatgaatgaaatcattaaatctatttgcaacctttaagcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28696074 |
agatgaatgaaatcattaaatctatttgcaacctt-aatcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacaca |
28696172 |
T |
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| Q |
113 |
cctaacttttgagttgattttatgtgcaaatgtttatttctttgctgtaataaatcaaagaataagaaggtgtcttatggatca |
196 |
Q |
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| T |
28696173 |
cctaacttttgggttgattttatgtataaatgtttatttatttgctgtaataaatcaaagaataagaaggtgtcttatggatca |
28696256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 29021305 - 29021178
Alignment:
| Q |
13 |
agatgaatgaaatcattaaatctatttgcaacctttaagcagtattgaatgcacattagttataatgtattcaaaactatttttgttttgaatttacaca |
112 |
Q |
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||||||| |||| ||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
29021305 |
agatgaaccaaatgattaaatctatttgcaaccttaat--agtattgaacgcacattagttaaaatgtattcaaaagtatttttgttttgaatttacaca |
29021208 |
T |
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| Q |
113 |
cctaacttttgagttgattttatgtgcaaa |
142 |
Q |
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||||||||||||||| |||||||||||||| |
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| T |
29021207 |
cctaacttttgagtttattttatgtgcaaa |
29021178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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