View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_11 (Length: 543)

Name: NF11453_low_11
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_11
NF11453_low_11
[»] chr3 (16 HSPs)
chr3 (84-535)||(2820903-2821353)
chr3 (94-289)||(2809624-2809828)
chr3 (4-79)||(2820797-2820872)
chr3 (233-306)||(2761632-2761705)
chr3 (102-143)||(2799725-2799766)
chr3 (213-266)||(2793422-2793475)
chr3 (390-483)||(2809970-2810063)
chr3 (89-138)||(2761565-2761614)
chr3 (392-491)||(2800402-2800501)
chr3 (84-143)||(2836337-2836396)
chr3 (457-491)||(2771782-2771816)
chr3 (214-284)||(2773460-2773530)
chr3 (1-43)||(2809501-2809543)
chr3 (192-262)||(2771531-2771605)
chr3 (397-474)||(2835080-2835157)
chr3 (95-143)||(2792671-2792719)
[»] chr1 (2 HSPs)
chr1 (211-306)||(11114997-11115092)
chr1 (389-491)||(11114761-11114863)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 84 - 535
Target Start/End: Original strand, 2820903 - 2821353
Alignment:
Q  84 gtcttgcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcagttttatatcgacgttttattttatatgtt 183  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2820903 gtcttgcaagcttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcagttttatatcaacgttttattttatatgtt 2821002  T
Q  184 tcgttttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttg 283  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2821003 tcattttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagcaatttg 2821102  T
Q  284 gttctccacgatacagctcaaagtaaaatatttccactcatcctgcaataatcagcaaaaagtggatcccgttcactgagcgactctggcttcnnnnnnn 383  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||           
T  2821103 gttctccacgatacagctcaaagtaaaatatttcctctcatcctgcaataatcagcaaaaagtggatcccattcactgagcgactgtggcttcttttttc 2821202  T
Q  384 nnnnngtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttg 483  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2821203 tttttgtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatc-gggggtatttctggactccattcagacgtctttttg 2821301  T
Q  484 atatttctgttctttactgtttttaagattggtgagaactttacttcatctc 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821302 atatttctgttctttactgtttttaagattggtgagaactttacttcatctc 2821353  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 2809624 - 2809828
Alignment:
Q  94 cttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataa--------------agcattcagttttatatcgacgttttattttata 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||| |||||||| |||| ||     
T  2809624 cttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttataaagcattcttgtactagcattcagttttataacgacgtttcatttaatg 2809723  T
Q  180 tgtttcgttttcttttgaaaaagatttagtgtgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaa 279  Q
    |||||| |||| |||||||||||||||| |||||||||||||| |||      ||||||||||||||||||||||||| |||||||||||||||||||||    
T  2809724 tgtttcattttgttttgaaaaagatttaatgtgtttaattaagctga-----gtatgagataactgacttgattgttttttgtgtcaatgcggacagaaa 2809818  T
Q  280 tttggttctc 289  Q
    ||||||||||    
T  2809819 tttggttctc 2809828  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 2820797 - 2820872
Alignment:
Q  4 tcctcttgtatcctttcatcacacgagtgccccaaaattcaatgatgatgaggtcctcactgttacctcatctgat 79  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||| |||| |||||||||    
T  2820797 tcctcttgtatcctttcatcacacgagtgacccaaaattcaatgatgatgagatctgcactattacttcatctgat 2820872  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 2761632 - 2761705
Alignment:
Q  233 tatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag 306  Q
    ||||||||||||||||||||| |||||||||||  || || ||||||||||||||||||  |||||||||||||    
T  2761632 tatgagataactgacttgattttttcttgtgtcggtgtggccagaaatttggttctccataatacagctcaaag 2761705  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Original strand, 2799725 - 2799766
Alignment:
Q  102 tatgaaggtacctttcctctgatcatgcaatgcttctcttat 143  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2799725 tatgaaggtacctttcctctgatcatgcaatgcttctcttat 2799766  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 2793422 - 2793475
Alignment:
Q  213 tttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtca 266  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||    
T  2793422 tttaattaagttgacaattgtatgagataactgactaaattgtttctcgtgtca 2793475  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 483
Target Start/End: Original strand, 2809970 - 2810063
Alignment:
Q  390 tcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttg 483  Q
    ||||||| |||||| ||||||||| |||  |||| ||||| ||||||||||||||||| |  |||| ||| |||||||||| |||||| |||||    
T  2809970 tcatttgaggtgttttataatttgattgtggaagttttgattcaaaatcttgtaatcaagacgtatatctagactccattcggacgtcattttg 2810063  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 2761565 - 2761614
Alignment:
Q  89 gcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttct 138  Q
    |||| |||||||||||||||||||||||| || ||||||| |||||||||    
T  2761565 gcaagcttcaaaatatgaaggtacctttcatccgatcatgtaatgcttct 2761614  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 491
Target Start/End: Original strand, 2800402 - 2800501
Alignment:
Q  392 atttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatttct 491  Q
    |||||||||||| |||||||| |||   |||||||||| |||||| |||||||||| |   ||| | |||||||||||||||| || ||| || ||||||    
T  2800402 atttgtggtgttttataatttagttttggaagctttgattcaaaaccttgtaatcaagacctatatttggactccattcagacatcatttggacatttct 2800501  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 2836396 - 2836337
Alignment:
Q  84 gtcttgcaaacttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttat 143  Q
    |||| |||| |||||||| | |||||||||| ||||||||||  ||||||||||||||||    
T  2836396 gtctagcaagcttcaaaacaagaaggtacctctcctctgatcgcgcaatgcttctcttat 2836337  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 491
Target Start/End: Original strand, 2771782 - 2771816
Alignment:
Q  457 tctggactccattcagacgtctttttgatatttct 491  Q
    ||||||||||||||||||||| |||||||||||||    
T  2771782 tctggactccattcagacgtcgttttgatatttct 2771816  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 2773460 - 2773530
Alignment:
Q  214 ttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttgg 284  Q
    |||||||| ||| ||| | ||||||||| |||| | |||||||||||||| ||||| |||||| |||||||    
T  2773460 ttaattaaattggcaaatgtatgagatacctgagtcgattgtttcttgtgccaatgtggacagcaatttgg 2773530  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2809501 - 2809543
Alignment:
Q  1 tgttcctcttgtatcctttcatcacacgagtgccccaaaattc 43  Q
    |||||||||||||||| |||||||| |||||| ||||||||||    
T  2809501 tgttcctcttgtatccattcatcactcgagtggcccaaaattc 2809543  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 2771531 - 2771605
Alignment:
Q  192 ttttgaaaaagatttagtgtgtttaattaagtt----gacaattctatgagataactgacttgattgtttcttgt 262  Q
    |||||||||||||||   |||||||||||||||    ||||||| |||||||||||||| |  ||||||||||||    
T  2771531 ttttgaaaaagatttgacgtgtttaattaagttgaccgacaattgtatgagataactgagtaaattgtttcttgt 2771605  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 2835157 - 2835080
Alignment:
Q  397 tggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagac 474  Q
    ||||||| ||||||||||||   |||||||||| |||||| ||||||| || |   ||| ||||||||||||||||||    
T  2835157 tggtgttttataatttggttctggaagctttgattcaaaaccttgtaaccaagacctatatctggactccattcagac 2835080  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 2792671 - 2792719
Alignment:
Q  95 ttcaaaatatgaaggtacctttcctctgatcatgcaatgcttctcttat 143  Q
    ||||||| |||||||| |||||||||||||||| |||  ||||||||||    
T  2792671 ttcaaaagatgaaggtgcctttcctctgatcattcaacacttctcttat 2792719  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 11115092 - 11114997
Alignment:
Q  211 tgtttaattaagttgacaattctatgagataactgacttgattgtttcttgtgtcaatgcggacagaaatttggttctccacgatacagctcaaag 306  Q
    ||||||||| ||||||||||| ||||||||||||||||  |||||||||||| | |||  |||||||| || ||||||| | ||||| ||||||||    
T  11115092 tgtttaatttagttgacaattgtatgagataactgactcaattgtttcttgtataaatttggacagaatttgggttctcaatgataccgctcaaag 11114997  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 11114863 - 11114761
Alignment:
Q  389 gtcatttgtggtgttgtataatttggttggagaagctttgactcaaaatcttgtaatcagggggtatttctggactccattcagacgtctttttgatatt 488  Q
    ||||||||||||||| |||||||||||||  ||| ||| || |||||| |||||||||| |   |||||||||| |||||||| | ||| |||||| |||    
T  11114863 gtcatttgtggtgttttataatttggttgtggaaacttcgattcaaaaccttgtaatcaagacctatttctggattccattcacatgtcattttgacatt 11114764  T
Q  489 tct 491  Q
    |||    
T  11114763 tct 11114761  T

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