View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_12 (Length: 539)
Name: NF11453_low_12
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Complemental strand, 32462390 - 32461880
Alignment:
| Q |
20 |
actaccaactgtatatgtctatgttatttcatactcatgtgctaaatgttactggtgcggtgctgattataaattatgttgatacaatgtatttttggta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32462390 |
actaccaactgtatatgtctatgttatttcatactcatatgctaaatgttactggtgcggtgctgattataaattatgttgatacaatgtatttttggta |
32462291 |
T |
|
| Q |
120 |
cgaaattaaattttgaatgccgccgtttttaaatgggaaaatttattactataggagagacagaaactataaccattgtctactgttggaccataacatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32462290 |
cgaaattaaattttgaatgccgccgtttttaaatgggaaaatttattactatatgagagacagaaactataaccattgtctaatgttggaccataacatt |
32462191 |
T |
|
| Q |
220 |
tataatcatataaaacttgttaacatgaatacatgatatttatgattcaaacctaatgatcttaggatgacaattgagtcccgttgcccatcactcacat |
319 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32462190 |
tataatcatatataacttgttaacatgaatatatgatatttatgattcaaacctaatgatcttaggatgacaattgagtcccgttgcccatcactcacat |
32462091 |
T |
|
| Q |
320 |
tcaattataaattcttctattacatagaaaaattgttaatgggttggatctaatccatccatccaacaattttttcattatgatatgtaaatcgctatta |
419 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || |||||||||| |
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| T |
32462090 |
tcaattataaattcatctaatacatagaaaaattgttaatgggttggatctaatccatccatctaacaattattttgttatgatatttagatcgctatta |
32461991 |
T |
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| Q |
420 |
gaaaattttaaattatagacaggctaaatcaatttctaaaatgcaaaaaccctgtctcttatcac--gatagagacaaaattaggtccaaataaatttta |
517 |
Q |
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|||| ||||||||||| || || ||||||| | | |||||||| |||| | |||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
32461990 |
aaaaaatttaaattataaacgggttaaatcagtctttaaaatgctaaaaatccgtctcttatcacgagatagagataaaattagatccaaataaatttta |
32461891 |
T |
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| Q |
518 |
tcgtatttcat |
528 |
Q |
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||||||||||| |
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| T |
32461890 |
tcgtatttcat |
32461880 |
T |
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