View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_14 (Length: 485)
Name: NF11453_low_14
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 26 - 475
Target Start/End: Original strand, 28611246 - 28611703
Alignment:
| Q |
26 |
tgttcatgcctagttcctatgctttcattgaattgcgtttgatgttacatcggctgatgtatttctgttaagaaatttcattgcaaatcaaccataaaac |
125 |
Q |
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| T |
28611246 |
tgttcatgcctagttcctatgctttcattgaattgcgtttgatgttgcatcggctgatgtattcctgttaagaaatttcattaaaaatcaaccataaaac |
28611345 |
T |
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| Q |
126 |
ctaacaggctacgcggtaataacatgag----------------ccatctatggttctcttttaagatgaaaagaaaagatgaagnnnnnnnnnnnncat |
209 |
Q |
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| T |
28611346 |
ctaacaggttatgcagtaataacatgagaaaacccataaacttgccatctatggttctcttttaagatgaaaagaaaagatgaa---aaaaaaaaaacat |
28611442 |
T |
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| Q |
210 |
ggaaaggtgtaagcttaattgcagtattttcccaannnnnnnncaaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatttattctt |
309 |
Q |
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| T |
28611443 |
ggaaaggtgtaagcttaattgcagtattttcccaattttttt-caaaacattgaaagcttggtgctagctatcaatgatttcttacatgtatatattctt |
28611541 |
T |
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| Q |
310 |
cttatttgttgttgcttgatagcttggtgttatagctttaacatgctatcaagcacgacacttgacacgtcgacacccctataataacttgagaaaatca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
28611542 |
cttatttgttgttgcttgatagcttggtgttatagc-ttaacatgctatcaagcacgacacttgacacgtcgacacctctataataatttgagaaaatca |
28611640 |
T |
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| Q |
410 |
aatctcctcttccccacaagctgcataatcctcctcaaatgtaaacatcttgatgacgctgttcat |
475 |
Q |
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| T |
28611641 |
aatctcctcttccccacaagctgcataa---tcctcaaatgtaaacatcttgatgatgctgttcat |
28611703 |
T |
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