View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_17 (Length: 472)

Name: NF11453_low_17
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_17
NF11453_low_17
[»] chr8 (15 HSPs)
chr8 (1-461)||(39187955-39188415)
chr8 (117-242)||(3160317-3160445)
chr8 (315-390)||(2875793-2875868)
chr8 (117-242)||(2889284-2889412)
chr8 (117-242)||(3145450-3145578)
chr8 (315-390)||(2795862-2795937)
chr8 (328-390)||(3144920-3144982)
chr8 (117-242)||(2874610-2874736)
chr8 (315-390)||(3159501-3159576)
chr8 (300-385)||(4416030-4416116)
chr8 (155-244)||(4416877-4416966)
chr8 (1-93)||(3505269-3505361)
chr8 (353-390)||(2890311-2890348)
chr8 (117-210)||(2797416-2797511)
chr8 (352-388)||(3494363-3494399)
[»] chr7 (1 HSPs)
chr7 (1-93)||(43313384-43313475)
[»] chr4 (1 HSPs)
chr4 (1-93)||(34743855-34743946)
[»] chr3 (2 HSPs)
chr3 (1-93)||(21531666-21531757)
chr3 (1-93)||(35167607-35167698)


Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 39187955 - 39188415
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaagatacatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39187955 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaagatacatga 39188054  T
Q  101 tacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188055 tacaacttgccacacaaacaaggtaatgttgtatattatcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaa 39188154  T
Q  201 accaaagtcaaagactcctaaacaaagcaccatgctcctaaccaactctaacaagatttgcccaatgcttggctcaccatggaccataggcccaagtgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188155 accaaagtcaaagactcctaaacaaagcaccatgctcctaaccaactctaacaagatttgcccaatgcttggctcaccatggaccataggcccaagtgta 39188254  T
Q  301 gtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattcacgacgtcagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39188255 gtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattcacgacgtcggt 39188354  T
Q  401 gcaatgattcccctttttctttcttcttatgagcagcttctatcttctctttattgttcat 461  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  39188355 gcaatgattcccctttttctttcttcttatgagcagcttctcacttctctttattgttcat 39188415  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 3160445 - 3160317
Alignment:
Q  117 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 213  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| |||||| ||||||| ||||||||    
T  3160445 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaagagataaaccagagtcaaag 3160346  T
Q  214 actcctaaacaaagcaccatgctcctaac 242  Q
    ||||||||| | ||||| |||||||||||    
T  3160345 actcctaaagagagcactatgctcctaac 3160317  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 2875793 - 2875868
Alignment:
Q  315 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 390  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  2875793 tgtagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 2875868  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 2889284 - 2889412
Alignment:
Q  117 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 213  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| ||| || ||||||| ||||||||    
T  2889284 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaatagataaaccagagtcaaag 2889383  T
Q  214 actcctaaacaaagcaccatgctcctaac 242  Q
    ||||||||| | ||||| |||||||||||    
T  2889384 actcctaaagagagcactatgctcctaac 2889412  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 3145578 - 3145450
Alignment:
Q  117 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 213  Q
    ||||||||||| ||||||||||   |||||||||| |||| || |||||||||| |||| |||||||||||| ||| ||| || ||||||| ||||||||    
T  3145578 aacaaggtaattttgtatattactatcaaatgataaatatgagtgtagaggctctacaagggtggaataacagaatgaaatagataaaccagagtcaaag 3145479  T
Q  214 actcctaaacaaagcaccatgctcctaac 242  Q
    ||||||||| | ||||| |||||||||||    
T  3145478 actcctaaagagagcactatgctcctaac 3145450  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 2795937 - 2795862
Alignment:
Q  315 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 390  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  2795937 tgtagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattca 2795862  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 390
Target Start/End: Complemental strand, 3144982 - 3144920
Alignment:
Q  328 ggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 390  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  3144982 ggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattca 3144920  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 2874610 - 2874736
Alignment:
Q  117 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaag 213  Q
    ||||||||||| ||||||||||   |||||||||| |||| ||||||||||||  |||| |||||||||||| |||   |||| ||||||| ||||||||    
T  2874610 aacaaggtaattttgtatattacgatcaaatgataaatatgagcgtagaggctatacaagggtggaataacagaat--gagagataaaccagagtcaaag 2874707  T
Q  214 actcctaaacaaagcaccatgctcctaac 242  Q
    ||||||||| | ||||| |||||| ||||    
T  2874708 actcctaaagagagcactatgctcataac 2874736  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 3159576 - 3159501
Alignment:
Q  315 tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca 390  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||| |||||| || ||||||||||||||||||    
T  3159576 tgtagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattca 3159501  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 385
Target Start/End: Complemental strand, 4416116 - 4416030
Alignment:
Q  300 agtgtcctaacgcactgtagtggatgagggtgaaatatatcaatgtaa-cttggttaccttctcaaatcttttagaagctcttgcat 385  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| ||  |||||||||  ||||||||||||||| |||||||    
T  4416116 agtgtcctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagcccttgcat 4416030  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 4416966 - 4416877
Alignment:
Q  155 agcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtcaaagactcctaaacaaagcaccatgctcctaacca 244  Q
    |||| |||||||| |||| | |||||||||||||| |||||| |||||||  ||| |||||||||||||| |||||  | ||||||||||    
T  4416966 agcgcagaggctctacaacgctggaataacaaaatgaaagagataaaccagggtccaagactcctaaacagagcactctactcctaacca 4416877  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3505269 - 3505361
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 93  Q
    |||||||||| |||||  | ||||||| | |||||| |||||| |||||| ||||||  |||||| ||||||| |||||||||||||| ||||    
T  3505269 cttcaagtccctgacaactttcttctcatgatcactaaaggaagtatcatcctctatttactttaaagcctgcattatggtttcagttcaaga 3505361  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 390
Target Start/End: Original strand, 2890311 - 2890348
Alignment:
Q  353 ttaccttctcaaatcttttagaagctcttgcatattca 390  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2890311 ttaccttctgaaatcttttagaagctcttgcatattca 2890348  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 2797511 - 2797416
Alignment:
Q  117 aacaaggtaatgttgtatatta---tcaaatgatagatattagcgtagaggctccacaatggtggaataacaaaatcaaagaggtaaaccaaagtca 210  Q
    ||||||||||| ||||||||||   |||||||||| |||| |  |||||||||| | || |||||||||||| ||| |||||| ||||||| |||||    
T  2797511 aacaaggtaattttgtatattaccatcaaatgataaatatgaatgtagaggctcta-aagggtggaataacagaatgaaagagataaaccagagtca 2797416  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 388
Target Start/End: Original strand, 3494363 - 3494399
Alignment:
Q  352 gttaccttctcaaatcttttagaagctcttgcatatt 388  Q
    |||||||||||| |||||||||||||| |||||||||    
T  3494363 gttaccttctcatatcttttagaagcttttgcatatt 3494399  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 43313384 - 43313475
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 93  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  43313384 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 43313475  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 34743946 - 34743855
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 93  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  34743946 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 34743855  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 21531757 - 21531666
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 93  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  21531757 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 21531666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35167698 - 35167607
Alignment:
Q  1 cttcaagtccttgacatatctcttctcctcatcactgaaggaaatatcattctctatgaactttagagcctgcgttatggtttcagtttaaga 93  Q
    |||||||||| |||||| | ||||||| ||||||||||||||| || ||| |||||||| ||||| ||||||| |||| | ||||||||||||    
T  35167698 cttcaagtccctgacatctttcttctcatcatcactgaaggaagtaccatcctctatgatctttacagcctgcattattg-ttcagtttaaga 35167607  T

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