View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_18 (Length: 463)
Name: NF11453_low_18
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 138 - 308
Target Start/End: Complemental strand, 44886637 - 44886467
Alignment:
| Q |
138 |
gtgtttataaactttattatatacatgttgatttgatgaataatttgtcaccgtttgaatacattcgattaatgtattcaacctaaaacctgaagcatgt |
237 |
Q |
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| T |
44886637 |
gtgtttataaactttattatatacatgttgatttgatgaataatttgtcaccgtttgaatacattcgattaatgtattcaacctaaaaccttaagcatgt |
44886538 |
T |
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| Q |
238 |
aaccnnnnnnntttgaatgacacatgttccacataatttgaatgacaaatgttcaatatcaaaggtataca |
308 |
Q |
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| T |
44886537 |
aaccaaaaaaaattgaatgacaaatgttccacataatttgaatgacaaatgttcaatatcaaaggtataca |
44886467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 44886774 - 44886670
Alignment:
| Q |
1 |
aggaagagacaaagttgcatgacttaaattcgtgtttactgccaatgaacaaagggacaaagccgcatttgatttggaaataatgcactatataccatgt |
100 |
Q |
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| T |
44886774 |
aggaagagacaaagttgtatgacttaaattcgtgtttactgccaatgaacaaagggacaaagccgcatttgatttggaaataatgcactatataccatgt |
44886675 |
T |
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| Q |
101 |
ttatg |
105 |
Q |
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||||| |
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| T |
44886674 |
ttatg |
44886670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 310 - 444
Target Start/End: Complemental strand, 44883870 - 44883736
Alignment:
| Q |
310 |
cttaaaacgttaagcatgtaaccnnnnnnnttataaaccttaagaaaaataatcaatgacaaatgttagttgttagattannnnnnnctccatcatcaac |
409 |
Q |
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| T |
44883870 |
cttaaaacgttaagcatgtaaccaaaaaaattataaaccttaagaaaaataatcaatgacaaatgttagttgttagattatttttttctccatcatcaac |
44883771 |
T |
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| Q |
410 |
ctaaaaacttccaacttcctatccttaacttaaac |
444 |
Q |
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| T |
44883770 |
gtaaaaacttccaacttcttatccttaacttaaac |
44883736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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