View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_2 (Length: 838)

Name: NF11453_low_2
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_2
NF11453_low_2
[»] chr6 (3 HSPs)
chr6 (638-822)||(7748954-7749143)
chr6 (303-433)||(7749555-7749685)
chr6 (318-394)||(3736549-3736625)
[»] chr2 (2 HSPs)
chr2 (295-370)||(13165838-13165913)
chr2 (306-361)||(41219900-41219955)
[»] chr7 (2 HSPs)
chr7 (311-373)||(13073619-13073681)
chr7 (301-387)||(24561825-24561912)
[»] chr4 (1 HSPs)
chr4 (295-361)||(30073550-30073615)
[»] chr3 (1 HSPs)
chr3 (332-396)||(465969-466032)
[»] chr8 (1 HSPs)
chr8 (295-345)||(9695516-9695566)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 638 - 822
Target Start/End: Complemental strand, 7749143 - 7748954
Alignment:
Q  638 catattacatcataacatgatacattaa---ttaaggttttgtttttgg--tatattgataggttagattgatnnnnnnnntacatttgttttgtgaatg 732  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||| ||  ||||| ||||||||  ||||||        ||||| |||||||||||||    
T  7749143 catattacatcataacatgatacattaaacattaagattttgttttgggagtatatggataggttgaattgatcgaaaaaatacatatgttttgtgaatg 7749044  T
Q  733 ttcacattgaaaacactatgaaacctattcatttcagaacatcaacacaaatcatgcacttggacaatcagtctcatttggaaggttcat 822  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7749043 ttcacattgaaaaaactatgaaacttattcatttcagaacatcaacacaaatcatgcacttggacaatcagtctcatttggaaggttcat 7748954  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 7749685 - 7749555
Alignment:
Q  303 ttcaaaatatatctgtgatttgacggaagacaagatgctcattgaatgtcagtgtaaaattcttttacactatcgttgcatcttctattttctcaatagt 402  Q
    |||| ||||||| | ||||| | | ||| ||||||  ||||||||||||| |||||||| | ||||||||||| | ||||||||||||| || |||||||    
T  7749685 ttcagaatatatttatgattggccagaatacaagacactcattgaatgtcggtgtaaaactattttacactataggtgcatcttctattgtcacaatagt 7749586  T
Q  403 ttacataaaattggttttgccatgacaaaaa 433  Q
    |||||||||||||||||||||||||||||||    
T  7749585 ttacataaaattggttttgccatgacaaaaa 7749555  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 3736625 - 3736549
Alignment:
Q  318 tgatttgacggaagacaagatgctcattgaatgtcagtgtaaaattcttttacactatcgttgcatcttctattttc 394  Q
    ||||||||||||| |||| ||||| |||| ||||||||||||||||  |||||||| ||  ||||||||||||||||    
T  3736625 tgatttgacggaatacaaaatgctaattggatgtcagtgtaaaattaatttacactgtcagtgcatcttctattttc 3736549  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 295 - 370
Target Start/End: Complemental strand, 13165913 - 13165838
Alignment:
Q  295 caactcatttcaaaatatatctgtgatttgacggaagacaagatgctcattgaatgtcagtgtaaaattcttttac 370  Q
    ||||| |||||||||||| ||||||||||||||| | |||| || ||||||| ||||||| |||||| | ||||||    
T  13165913 caactaatttcaaaatatctctgtgatttgacgggatacaaaatactcattggatgtcagcgtaaaactattttac 13165838  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 41219900 - 41219955
Alignment:
Q  306 aaaatatatctgtgatttgacggaagacaagatgctcattgaatgtcagtgtaaaa 361  Q
    ||||||| | ||||||||||||||| |||||||| |||||||||||  ||||||||    
T  41219900 aaaatatttttgtgatttgacggaatacaagatggtcattgaatgttggtgtaaaa 41219955  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 13073681 - 13073619
Alignment:
Q  311 atatctgtgatttgacggaagacaagatgctcattgaatgtcagtgtaaaattcttttacact 373  Q
    |||||||||||||| ||||| ||||||||||| ||| ||| |||||||||| | |||||||||    
T  13073681 atatctgtgatttggcggaatacaagatgctcgttggatgacagtgtaaaactattttacact 13073619  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 24561825 - 24561912
Alignment:
Q  301 atttcaaaatatatctgtgatttgacggaagacaa-gatgctcattgaatgtcagtgtaaaattcttttacactatcgttgcatcttc 387  Q
    ||||||||| || ||| | ||| ||||||| |||| |||||||||||||||  | ||||||||| ||||||| |||| ||||||||||    
T  24561825 atttcaaaacatctctttaattagacggaatacaaagatgctcattgaatgcaaatgtaaaattgttttacattatcattgcatcttc 24561912  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 361
Target Start/End: Original strand, 30073550 - 30073615
Alignment:
Q  295 caactcatttcaaaatatatctgtgatttgacggaagacaagatgctcattgaatgtcagtgtaaaa 361  Q
    ||||| |||||||||||| ||||||||| | ||||| ||||||||||||||| || |||||||||||    
T  30073550 caactaatttcaaaatatctctgtgattgg-cggaatacaagatgctcattggatatcagtgtaaaa 30073615  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 396
Target Start/End: Complemental strand, 466032 - 465969
Alignment:
Q  332 acaagatgctcattgaatgtcagtgtaaaattcttttacactatcgttgcatcttctattttctc 396  Q
    |||| |||||||||| |||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  466032 acaatatgctcattggatgtcagtgtaaaactactttacactgtcg-tgcatcttctattttctc 465969  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 9695566 - 9695516
Alignment:
Q  295 caactcatttcaaaatatatctgtgatttgacggaagacaagatgctcatt 345  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||| ||||||    
T  9695566 caactaatttcaaaatatatctctgatttggcggaatacaagatactcatt 9695516  T

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