View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_20 (Length: 432)

Name: NF11453_low_20
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_20
NF11453_low_20
[»] chr2 (5 HSPs)
chr2 (1-268)||(3044453-3044724)
chr2 (280-378)||(3044066-3044166)
chr2 (241-300)||(1529361-1529420)
chr2 (388-419)||(3044018-3044049)
chr2 (138-273)||(29463205-29463342)
[»] chr6 (2 HSPs)
chr6 (1-182)||(128745-128925)
chr6 (136-185)||(16599327-16599376)
[»] chr5 (3 HSPs)
chr5 (205-264)||(32528991-32529050)
chr5 (217-294)||(3522440-3522517)
chr5 (136-275)||(26449051-26449192)
[»] chr1 (4 HSPs)
chr1 (195-274)||(42471281-42471360)
chr1 (19-125)||(42471438-42471543)
chr1 (195-309)||(32712046-32712160)
chr1 (241-274)||(47666583-47666616)
[»] scaffold1822 (1 HSPs)
scaffold1822 (195-300)||(511-615)
[»] chr3 (2 HSPs)
chr3 (195-256)||(48935746-48935807)
chr3 (138-182)||(45818057-45818101)
[»] chr8 (1 HSPs)
chr8 (195-294)||(33304045-33304142)
[»] chr4 (2 HSPs)
chr4 (195-274)||(34667136-34667215)
chr4 (136-181)||(14518541-14518586)
[»] scaffold1793 (1 HSPs)
scaffold1793 (231-300)||(4-73)
[»] chr7 (2 HSPs)
chr7 (136-185)||(37970428-37970477)
chr7 (230-298)||(29127487-29127555)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 3044724 - 3044453
Alignment:
Q  1 ctatgattttcttagtaattttcttcataaaataacaatcgacatcaactccaactgttttctttccaatcttgttcaaaattgatttaattatgtgtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3044724 ctatgattttcttagtaattttcttcataaaataacaatcgacatcaactccaactgttttctttccaatcttgttcacaattgatttaattatgtgtgt 3044625  T
Q  101 aaaattaaagttatgcagcgttgtttattttatcaatgtcaataacaagtgtgcac----caaacaaatgatagaataaaataatgcta--nnnnnnnnn 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    |||||||||||||||||||||||||||||               
T  3044624 aaaatttaagttatgcagcgttgtttattttatcaatgtcaata--aagtgtgcaccaaacaaacaaatgatagaataaaataatgctatcttttttctt 3044527  T
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctatttt 268  Q
    ||||||| |  |||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3044526 atcatgtatgtaccaaacatatgataggataagtctttatcatattactatcatagcctatctttatctttttt 3044453  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 3044166 - 3044066
Alignment:
Q  280 atgtgtctatcatatcatgtggatcaaacgggctcctatattcaaccattaaacaaagtaatg--nnnnnnngaaaggttaaacaaagtaacgttcttga 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  3044166 atgtgtctatcatatcatgtggatcaaacgggctcctatattcaaccattaaacaaagtaatgtttttttttgaaaggttaaacaaagtaacgttcttga 3044067  T
Q  378 c 378  Q
    |    
T  3044066 c 3044066  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 1529420 - 1529361
Alignment:
Q  241 actatcatatcctatctttatctattttctaatcttaacatgtgtctatcatatcatgtg 300  Q
    ||||||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||    
T  1529420 actatcatatcatatctttatccattttctaatcttatcatatctctatcatatcatgtg 1529361  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Complemental strand, 3044049 - 3044018
Alignment:
Q  388 caaagtaatgttttttgttcaacacacaaact 419  Q
    ||||||||||||||||||||||||||||||||    
T  3044049 caaagtaatgttttttgttcaacacacaaact 3044018  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 29463205 - 29463342
Alignment:
Q  138 gtcaataacaagtgtgcaccaaacaaatgatagaataaaataatgctannnnnnnnn--atcatgtgtacaccaaacacataatagaataagtctttatc 235  Q
    |||||||||||||||| | |||||| ||||||  ||||||||||||||           ||||| ||||||||||||| ||  | | |||| | ||||||    
T  29463205 gtcaataacaagtgtgtatcaaacatatgatatgataaaataatgctatcatctttcttatcatatgtacaccaaacatatgttcggataaatgtttatc 29463304  T
Q  236 atattactatcatatcctatctttatctattttctaat 273  Q
    || | ||||||||||| |||||| ||||||||||||||    
T  29463305 atgtcactatcatatcttatcttcatctattttctaat 29463342  T

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Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 128925 - 128745
Alignment:
Q  1 ctatgattttcttagtaattttcttcataaaataacaatcgacatcaactccaactgttttctttccaatcttgttcaaaattgatttaattatgtgtgt 100  Q
    ||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||  |||| ||||||||||| ||||    
T  128925 ctatgattttcttcgtaattttctttataaaataacaatcgatatcaattccaactgttttctttccaatcttgttcgcaatttatttaattatgggtgt 128826  T
Q  101 aaaattaaagttatgcagcgttgtttattttatcaatgtcaataacaagtgtgcaccaaacaaatgatagaataaaataatg 182  Q
    |||||||||||||| || | |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||    
T  128825 aaaattaaagttatacatctttgtttattttatc-atgtcaataacaagtgtccatcaaacaaatgatagaataaaataatg 128745  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 16599327 - 16599376
Alignment:
Q  136 atgtcaataacaagtgtgcaccaaacaaatgatagaataaaataatgcta 185  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||    
T  16599327 atgtcaatatcaagtgtgcaccaaacacatgatagaattaaataatgcta 16599376  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 32529050 - 32528991
Alignment:
Q  205 caccaaacacataatagaataagtctttatcatattactatcatatcctatctttatcta 264  Q
    |||||||||||| ||||||||||| | |||||||| | ||||||||||||||||||||||    
T  32529050 caccaaacacatgatagaataagtgtctatcatatcagtatcatatcctatctttatcta 32528991  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 3522517 - 3522440
Alignment:
Q  217 aatagaataagtctttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatat 294  Q
    ||||| |||| | |||||||| ||||||||||||  |||||||||||||||||||||  || ||||| ||||||||||    
T  3522517 aataggataaatgtttatcatgttactatcatattatatctttatctattttctaattatatcatgtctctatcatat 3522440  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 275
Target Start/End: Original strand, 26449051 - 26449192
Alignment:
Q  136 atgtcaataacaagtgtgcaccaaacaaatgatagaataaaataatgcta--nnnnnnnnnatcatgtgtacaccaaacacataatagaataagtcttta 233  Q
    ||||||||||||| |||||| |||||| ||||||| ||||||||||| ||           ||||| ||| |||||||  ||| |||| |||||| | ||    
T  26449051 atgtcaataacaaatgtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagcatgataggataagtgtcta 26449150  T
Q  234 tcatattactatcatatcctatctttatctattttctaatct 275  Q
    |||| | ||||||||||| ||| |||||| ||||||||||||    
T  26449151 tcatgtcactatcatatcatatttttatccattttctaatct 26449192  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 42471360 - 42471281
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctattttctaatc 274  Q
    ||||||||| |||||||||||| |||  |||| | | |||||||| | ||||||||| ||||||||||||||||||||||    
T  42471360 atcatgtgtgcaccaaacacatgatatgataaatgtctatcatatcattatcatatcatatctttatctattttctaatc 42471281  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 42471543 - 42471438
Alignment:
Q  19 ttttcttcataaaataacaatcgacatcaactccaactgttttctttccaatcttgttcaaaattgatttaattatgtgtgtaaaattaaagttatgcag 118  Q
    ||||||||||||||| ||| || | ||||| |||| |  ||||||| |||||||||||   ||| |||||||||| ||||||||||||||||||||| ||    
T  42471543 ttttcttcataaaattacagtcaatatcaattccatca-ttttcttcccaatcttgttaccaatagatttaattacgtgtgtaaaattaaagttatggag 42471445  T
Q  119 cgttgtt 125  Q
     ||||||    
T  42471444 tgttgtt 42471438  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 32712160 - 32712046
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatat 294  Q
    ||||||||| |||||||| ||| |||| |||||| | |||||| ||||||||||||| |||  ||||| |  | || ||| || |||||||||||| |||    
T  32712160 atcatgtgtgcaccaaacgcatgatagcataagtatctatcatgttactatcatatcatattcttatccaactccttatcatatcatgtgtctatcctat 32712061  T
Q  295 catgtggatcaaacg 309  Q
    |||||| | ||||||    
T  32712060 catgtgcaccaaacg 32712046  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 47666616 - 47666583
Alignment:
Q  241 actatcatatcctatctttatctattttctaatc 274  Q
    ||||||||||||||||||||||||||||||||||    
T  47666616 actatcatatcctatctttatctattttctaatc 47666583  T

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Target: scaffold1822 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1822
Description:

Target: scaffold1822; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 615 - 511
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatat 294  Q
    ||||||||| |||||||||||| |||| |||  | || ||||| | |||| ||||||||||| ||||| ||||| | ||| || |||||||||||| |||    
T  615 atcatgtgtgcaccaaacacatgataggatagatgtt-atcatgtcactaccatatcctatccttatccatttttttatcctatcatgtgtctatcctat 517  T
Q  295 catgtg 300  Q
    ||||||    
T  516 catgtg 511  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 48935807 - 48935746
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatc 256  Q
    |||||||||||||||||||||| |||| |||||| | |||||| | |||||| |||||||||    
T  48935807 atcatgtgtacaccaaacacatgataggataagtgtctatcatgtcactatcctatcctatc 48935746  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 45818101 - 45818057
Alignment:
Q  138 gtcaataacaagtgtgcaccaaacaaatgatagaataaaataatg 182  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||    
T  45818101 gtcaataacaaatgtgcaccaaacatatgataggataaaataatg 45818057  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 33304142 - 33304045
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatat 294  Q
    |||||||||||| ||||||||||||| ||||| | | ||||  || || ||||||| ||||||||||| |||||||||||||| |  || ||||||||||    
T  33304142 atcatgtgtacatcaaacacataatataataaatgtctatc-catcacgatcatat-ctatctttatccattttctaatcttatctagtctctatcatat 33304045  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 34667136 - 34667215
Alignment:
Q  195 atcatgtgtacaccaaacacataatagaataagtctttatcatattactatcatatcctatctttatctattttctaatc 274  Q
    ||||||| | ||||||||| || | || |||| | |||||||| | |||||||||||||||||||||| ||||| |||||    
T  34667136 atcatgtttgcaccaaacatatgagaggataaatatttatcatgtcactatcatatcctatctttatccattttttaatc 34667215  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 14518541 - 14518586
Alignment:
Q  136 atgtcaataacaagtgtgcaccaaacaaatgatagaataaaataat 181  Q
    |||| |||||||||||||||||||||| ||||||  ||||||||||    
T  14518541 atgtgaataacaagtgtgcaccaaacatatgatatgataaaataat 14518586  T

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Target: scaffold1793 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1793
Description:

Target: scaffold1793; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 4 - 73
Alignment:
Q  231 ttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatatcatgtg 300  Q
    ||||||| | |||| ||||||||||| ||||| ||||| | ||| || |||||||||||| |||||||||    
T  4 ttatcatgtcactaccatatcctatccttatccatttttttatcctatcatgtgtctatcctatcatgtg 73  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 37970428 - 37970477
Alignment:
Q  136 atgtcaataacaagtgtgcaccaaacaaatgatagaataaaataatgcta 185  Q
    ||||| ||| ||||||||||||||||  ||||||| ||||||||||||||    
T  37970428 atgtcgatagcaagtgtgcaccaaacgcatgataggataaaataatgcta 37970477  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 29127487 - 29127555
Alignment:
Q  230 tttatcatattactatcatatcctatctttatctattttctaatcttaacatgtgtctatcatatcatg 298  Q
    |||||| ||| ||||||||||| |||| ||||| | ||||| ||| || ||||| ||||||||||||||    
T  29127487 tttatcctatcactatcatatcatatccttatccagtttcttatcctatcatgtttctatcatatcatg 29127555  T

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