View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_22 (Length: 424)
Name: NF11453_low_22
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 40083032 - 40082813
Alignment:
| Q |
11 |
caaagggggaatccgtactctgtac-----gaccattatagctcatactatagtttcttcctatttgtgctgtgtttgtgttgtatatatacagtgtaac |
105 |
Q |
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| T |
40083032 |
caaaaggggaatccgtactctgtacagtacgaccattatagttcatactatagtttcttcctatttgtgctgtgtttgtgttgtatatatacagggtaac |
40082933 |
T |
|
| Q |
106 |
ttttgttccttcttctttttacctctttgtctttgaacaatgaaaatgcaatactaatcttttactcctcaaagtatctattnnnnnnntgtgtcaaatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40082932 |
ttttgttccttcttctttttacctctttgtctttgaacaatgaaaatgcaatactaatcttttactcctcaaagtatctattaaaaaaatgtgtcaaatg |
40082833 |
T |
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| Q |
206 |
aatttatagataaagactga |
225 |
Q |
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|||||||||||||||||||| |
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| T |
40082832 |
aatttatagataaagactga |
40082813 |
T |
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