View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_25 (Length: 412)
Name: NF11453_low_25
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 23 - 404
Target Start/End: Complemental strand, 22720461 - 22720076
Alignment:
| Q |
23 |
aaaggttcctctattacaggtctctttgtt----attttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
118 |
Q |
| |
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||||||| ||||||||||||||||||| || || ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
22720461 |
aaaggtttctctattacaggtctctttctttgtcatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22720362 |
T |
|
| Q |
119 |
aagttagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
218 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22720361 |
aagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaagttcaaccagttattcaaatgctggattttttagcattcttacatt |
22720262 |
T |
|
| Q |
219 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatgaagaccttccattgctttctaccaatgacagtgccaacggaactttt |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
22720261 |
ctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatgaagaccttccattgctttctaccaatgagtgtgccaatggaactttt |
22720162 |
T |
|
| Q |
319 |
tcaacttttagaaacaagcttgtgttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
404 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22720161 |
acaacttttagaaacaagcttgagttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
22720076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 73 - 404
Target Start/End: Original strand, 22738248 - 22738579
Alignment:
| Q |
73 |
aatatgactaaacttgcccctcttgaagaaacccttttgaatggtgaagttagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaa |
172 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22738248 |
aatatgactaaacttgcccctcttgaagaatcccttttgaatggtgaagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaa |
22738347 |
T |
|
| Q |
173 |
tttcaaccagttattcaaatgctggatttttcagcattcttacattctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
272 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
22738348 |
gttcaaccagttattcaaatgctggatttttaagcattcttacattctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatga |
22738447 |
T |
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| Q |
273 |
agaccttccattgctttctaccaatgacagtgccaacggaactttttcaacttttagaaacaagcttgtgttggagtgtggtaatgttaggaatgtgacc |
372 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22738448 |
agaccttccattgctttctaccaatgaatgtgccaatggaacttttacaacttttagaaacaagcttgagttggagtgtggtaatgttaggaatgtgacc |
22738547 |
T |
|
| Q |
373 |
actattaacctcgccaaggtgttgttcttctc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
22738548 |
actattaacctcgccaaggtgttgttcttctc |
22738579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 404
Target Start/End: Complemental strand, 22728795 - 22728410
Alignment:
| Q |
23 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
22728795 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22728696 |
T |
|
| Q |
119 |
aagttagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
218 |
Q |
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||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
22728695 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
22728596 |
T |
|
| Q |
219 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatgaagaccttccattgctttctaccaatgacagtgccaacggaactttt |
318 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
22728595 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatgaagaccttccactgctttctaccaatgacagtgccaatggaactttt |
22728496 |
T |
|
| Q |
319 |
tcaacttttagaaacaagcttgtgttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
404 |
Q |
| |
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|||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22728495 |
tcaacttttaaaaacgagcttgacttgaagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtcttgttcttctc |
22728410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 5590757 - 5591142
Alignment:
| Q |
23 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
5590757 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
5590856 |
T |
|
| Q |
119 |
aagttagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
218 |
Q |
| |
|
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5590857 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
5590956 |
T |
|
| Q |
219 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatgaagaccttccattgctttctaccaatgacagtgccaacggaactttt |
318 |
Q |
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|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
5590957 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatgaagaccttccactgctttctaccaatgacagtgccaatggaactttt |
5591056 |
T |
|
| Q |
319 |
tcaacttttagaaacaagcttgtgttggagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtgttgttcttctc |
404 |
Q |
| |
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|||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5591057 |
tcaacttttaaaaacgagcttgacttgaagtgtggtaatgttaggaatgtgaccactattaacctcgccaaggtcttgttcttctc |
5591142 |
T |
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