View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_26 (Length: 409)

Name: NF11453_low_26
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_26
NF11453_low_26
[»] chr2 (1 HSPs)
chr2 (18-315)||(26377101-26377398)
[»] chr3 (2 HSPs)
chr3 (241-316)||(50063925-50064000)
chr3 (249-309)||(7227152-7227212)
[»] chr1 (2 HSPs)
chr1 (241-311)||(33966650-33966720)
chr1 (241-309)||(50204531-50204599)
[»] chr6 (2 HSPs)
chr6 (241-316)||(25101044-25101119)
chr6 (241-278)||(23890001-23890038)
[»] scaffold1211 (1 HSPs)
scaffold1211 (20-109)||(1063-1152)
[»] chr5 (1 HSPs)
chr5 (249-309)||(43281148-43281208)
[»] chr4 (1 HSPs)
chr4 (243-309)||(55911195-55911260)
[»] chr8 (1 HSPs)
chr8 (255-311)||(29168556-29168612)
[»] chr7 (1 HSPs)
chr7 (249-309)||(46082492-46082552)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 26377101 - 26377398
Alignment:
Q  18 ggttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26377101 ggttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaatgaatgcac 26377200  T
Q  118 aagaacaaaatgattggttgtcaattgtacacgtctcagacgacacatgggctatagtagnnnnnnnnaatgcaattcttagactagagtaaaaagattt 217  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  26377201 aagaacaaaatgattggttgtcaactgtacacgtctctgacgacacatgggctatagtagttttttttaatgcaattcttagactagagtaaaaagattt 26377300  T
Q  218 gttttgggtttctaatagtaggaaggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattcc 315  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26377301 gttttgggtttctaatagtaggaaggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctccaccgtgcttcgacttcattcc 26377398  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 50063925 - 50064000
Alignment:
Q  241 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 316  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||    
T  50063925 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgagcttcgacttcactccg 50064000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 7227152 - 7227212
Alignment:
Q  249 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 309  Q
    |||||||||| ||||||  ||||||||||| | |||| ||||||| ||| |||||||||||    
T  7227152 gtgctggctcttaggattgtacgattctacgtcccacagcacctcgaccatgcttcgactt 7227212  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 311
Target Start/End: Original strand, 33966650 - 33966720
Alignment:
Q  241 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 311  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  33966650 aggatcgagtgctggctcgtaggatcttacgattctacgtgccacggcacctcaaccgtgctttgacttca 33966720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 50204531 - 50204599
Alignment:
Q  241 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 309  Q
    ||||||| ||||||| |||||||||| || ||| |||| | |||| ||||||| | |||||||||||||    
T  50204531 aggatcgagtgctggttcgtaggatcgtatgatcctacgttccacagcacctcaatcgtgcttcgactt 50204599  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 25101119 - 25101044
Alignment:
Q  241 aggatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttcattccg 316  Q
    ||||||| |||||||||||||||||||||||||||||  | |||||||||||| ||||||||||||||||| ||||    
T  25101119 aggatcgagtgctggctcgtaggatcttacgattctatgtcccacggcacctcaaccgtgcttcgacttcactccg 25101044  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 23890038 - 23890001
Alignment:
Q  241 aggatcgtgtgctggctcgtaggatcttacgattctac 278  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  23890038 aggatcgagtgctggctcgtaggatcgtacgattctac 23890001  T

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Target: scaffold1211 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 1063 - 1152
Alignment:
Q  20 ttgtattgtactcgaaagttcgttcaacttattgattgtagagactagatgttagaatagaaaatccgacttgaaagaatgtagataaat 109  Q
    |||||||||| | |||||||  || ||||||||||| ||||||||||||| ||||| ||| ||||| ||||  ||||| ||| |||||||    
T  1063 ttgtattgtatttgaaagtttcttaaacttattgatggtagagactagattttagactagcaaatctgactgcaaagactgttgataaat 1152  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 43281208 - 43281148
Alignment:
Q  249 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 309  Q
    ||||||| || ||||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  43281208 gtgctggttcataggatcgtacgattctacatcccacggcacctcaatcatgcttcgactt 43281148  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 55911195 - 55911260
Alignment:
Q  243 gatcgtgtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 309  Q
    ||||| ||||||| |||||||||| |||||| |||||| |||||||||||| | ||||||| |||||    
T  55911195 gatcgagtgctggttcgtaggatcatacgatcctacat-ccacggcacctcaatcgtgctttgactt 55911260  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 29168612 - 29168556
Alignment:
Q  255 gctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgacttca 311  Q
    ||||||||||||  |||||  ||| |||||| ||||||| |||||||||||||||||    
T  29168612 gctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgacttca 29168556  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 46082552 - 46082492
Alignment:
Q  249 gtgctggctcgtaggatcttacgattctacatgccacggcacctccaccgtgcttcgactt 309  Q
    |||||||||| ||||||| ||||||||||  | || | ||||||| |||||||||||||||    
T  46082552 gtgctggctcataggatcgtacgattctatgtccctccgcacctcaaccgtgcttcgactt 46082492  T

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