View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_27 (Length: 400)
Name: NF11453_low_27
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Original strand, 36422632 - 36423000
Alignment:
| Q |
19 |
ggtatagcactagttatacttgctacctggtttcaccttccatcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaa |
118 |
Q |
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| T |
36422632 |
ggtatagcactagttatacttgctacctggtttcaccttccttcatcattcaacaaagaagctctagactgcaacatcttctctggatggtgcacctcaa |
36422731 |
T |
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| Q |
119 |
agaaccgttttcaatcttcaaatccaatccacaaaccatccttctccactcgccatcaacaaccaaaccatgaatccgatgaacctcgccaccctttaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422732 |
agaaccgttttcaatcttcaaatccaatccacaaaccatccttctccactcgccgtcaacaaccaaaccatgaatccgatgaacctcgccaccctttaga |
36422831 |
T |
|
| Q |
219 |
ccctctaaccatccaagaattcaacaaagttcgtgcgatcctctcgacacaccctctttttaagtcctcaaacagttacactctcaattccattgttcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422832 |
ccctctaaccatccaagaattcaacaaagttcgtgcgatcctctcgacacaccctctttttaagtcctcaaacagttacactctcaattccattgttcta |
36422931 |
T |
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| Q |
319 |
gaagaaccagacaaagaacttgtcctcaaatggaaaaatggtcaaccattacttcctaggaaagcctct |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422932 |
gaagaaccagacaaagaacttgtcctcaaatggaaaaatggtcaaccattacttcctaggaaagcctct |
36423000 |
T |
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