View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_29 (Length: 386)
Name: NF11453_low_29
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 22371153 - 22371488
Alignment:
| Q |
19 |
gtagaaggtgcctcaaactgtgccatacagtactcatgttcgttttttaagtttctgccatggttggacgcaacatcgaaaccttgttgtcataccactg |
118 |
Q |
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| T |
22371153 |
gtagaaggtgcctcaaactgtgccatacagtactcctgttcgttttttaagtttctgccatggttgg----------------------tcataccactg |
22371230 |
T |
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| Q |
119 |
cttgactggtaaggatgatgcaagtggttatgcaaaggaacaannnnnnngatctttcattacatgcttcatacgagctttgaatatatgtctgatcgtt |
218 |
Q |
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| T |
22371231 |
cttgactggtaaggatgatgcaagtggttatgcaaaggaacaatttttttgatctttcattacatgcttcatacgagctttgaatatatgtctgatcgtt |
22371330 |
T |
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| Q |
219 |
gttattttttgatcaatcttataggtctattggataccatctaatccatttgatgagctggagaaggttgtcaacaagatgaggctgaaatatatttcta |
318 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22371331 |
gttattctttgctcaatcttataggtctattggataccatccaatccatttgatgagctggagaaggttgtcaacaagatgaggccgaaatatatttcta |
22371430 |
T |
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| Q |
319 |
aattatgttatcgtgctacttggttgttgagcattttcatcatgtattttcccctttg |
376 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22371431 |
aattctgttatcgtgctacttggttgttgagcattttcatcatgtattttcccctttg |
22371488 |
T |
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