View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_3 (Length: 809)
Name: NF11453_low_3
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 190 - 557
Target Start/End: Original strand, 43890191 - 43890558
Alignment:
| Q |
190 |
gggtattaagagtgaagagcaagaacaaatacctggcaaatcctcaggatcccacttgtacacatcggtttctttgataacgttgaacttcaacttcttc |
289 |
Q |
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| T |
43890191 |
gggtattaagagtgaagagcaagaacaaatacctggcaaatcctcaggatcccacttgtacacatcggtttctttgataacgttgaacttcaacttcttc |
43890290 |
T |
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| Q |
290 |
ccacaaatcttccttttcagataatacatcaccaactcctcatctgtaggatgaaagcggaaaccgggcatcgacgacatcacctcactgaaacaatcag |
389 |
Q |
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| T |
43890291 |
ccacaaatcttccttttcagataatacatcaccaactcctcatctgtaggatgaaagcggaaaccgggcatcgacgacatcacctcactgaaacaatcag |
43890390 |
T |
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| Q |
390 |
cagaagcagattccgaaactgcacccatctcgatcagaagacaaaaataacaaccctcgattacccagcaccaaaaatcgaaactttttcgatcaaaacc |
489 |
Q |
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| T |
43890391 |
cagaagcagattccgaaactgcacccatctcgatcagaagacaaaaataacaacactcgattacccagcaccaaaaatcgaaactttttcgatcaaaacc |
43890490 |
T |
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| Q |
490 |
aaaaacccacaacaatattgactgattcaagccttagatagttggaattgacgatcgaatagtagaat |
557 |
Q |
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| T |
43890491 |
aaaaacccacaacaatattgactgattcaagccttagatagttggaattgacgatcgaatagtagaat |
43890558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 625 - 781
Target Start/End: Original strand, 43890626 - 43890785
Alignment:
| Q |
625 |
caagctttttgaataaataagtggtgtaacaaaaaacccacaacaaaataataggatcgagcctctgggtacgaggattcgaggattaggttgtcgtgaa |
724 |
Q |
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| T |
43890626 |
caagctttttgaataaataagtggtgtaacaaaaaacccacaacaaaataataggatcgaacctctgggtacgaggattcgaagattaggttgtcgtgaa |
43890725 |
T |
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| Q |
725 |
ac---nnnnnnnnnnccaaaatatcgagagagaaaatggatgaaaaataacagggtatga |
781 |
Q |
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| T |
43890726 |
acaaaaaaagaaaccccaaaatatcgagagagaaaatggatgaaaaataacagggtatga |
43890785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43890002 - 43890053
Alignment:
| Q |
1 |
tcaaatcctgaattgctaagtactgtgcataatattcacagcaaggagatct |
52 |
Q |
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| T |
43890002 |
tcaaatcctgaattgctaagtactgtgcataatattcacagcaaggagatct |
43890053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 631 - 718
Target Start/End: Complemental strand, 42367674 - 42367589
Alignment:
| Q |
631 |
ttttgaataaataagtggtgtaacaaaaaacccacaacaaaataataggatcgagcctctgggtacgaggattcgaggattaggttgt |
718 |
Q |
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| T |
42367674 |
ttttgaataaataagcgatttaacataaaacccacaacaaaataataggatagaacct-tgggtacgaggattc-aggattcggttgt |
42367589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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