View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_36 (Length: 363)

Name: NF11453_low_36
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_36
NF11453_low_36
[»] chr1 (1 HSPs)
chr1 (37-363)||(25678601-25678930)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 363
Target Start/End: Original strand, 25678601 - 25678930
Alignment:
Q  37 tatttcatccatcatgctttttctcctacacattccctccattctcttcatgctcatatgaaattcaatatttctaaataatttctccaactaactcacc 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  25678601 tatttcatccatcatgctttttctcctacacattcactccattctcttcatgctcatatcaaattcaatatttctaaataatttctccaactaactcact 25678700  T
Q  137 cttgtaatcctcaaagcccaatacatttcctgattcaaa---ccaaattactacacatccacaacaaaaagggttagtccattatatatcccttgttcga 233  Q
    ||||||||||||||| ||||||||||||| |||||||||   || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678701 cttgtaatcctcaaaacccaatacatttcttgattcaaattacccaattactacacatccacaacaaaaagggttagtccattatatatcccttgttcga 25678800  T
Q  234 tcaatgactcttgcttatttgttaggctgagtgccattttctccgattgattcatccactgttttgagtaaattctataatgatcgatcataatgttaca 333  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25678801 tcaatgactcttgcttatttgttaggctgagtgccattttctccaattgattcatccactgttttgagtaaattctataatgatcgatcataatgttaca 25678900  T
Q  334 ccactattccactagacaaggctttgcttc 363  Q
    ||||||||||||||||||||||||||||||    
T  25678901 ccactattccactagacaaggctttgcttc 25678930  T

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