View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_37 (Length: 358)
Name: NF11453_low_37
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 38275378 - 38275582
Alignment:
| Q |
8 |
gagcagagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaa |
107 |
Q |
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| T |
38275378 |
gagcaaagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctctttgcggcccaaaatgtgtaaagagtcaa |
38275477 |
T |
|
| Q |
108 |
gctgaatgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgtt |
207 |
Q |
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| T |
38275478 |
gctgaacgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagaaaaaaaatagcaattgttatttcaagtgtt |
38275577 |
T |
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| Q |
208 |
cagat |
212 |
Q |
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||||| |
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| T |
38275578 |
cagat |
38275582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 38271627 - 38271831
Alignment:
| Q |
8 |
gagcagagagaataagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaa |
107 |
Q |
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| T |
38271627 |
gagcaaagagaataagaaccaacaaagctcccaacaagaatcggtctaaagagccgaaatcatgacctctttttgcggcccaatatgtgtaaagagtcaa |
38271726 |
T |
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| Q |
108 |
gctgaatgcaactgcagtagttgatataacagatactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgtt |
207 |
Q |
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| T |
38271727 |
gctgaacacaactgcaatagttgatataacagatactagaattgctttccctgcatccgaattatcaagaaacaagatagaaattgttttttcaagtgtt |
38271826 |
T |
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| Q |
208 |
cagat |
212 |
Q |
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||||| |
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| T |
38271827 |
cagat |
38271831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 41 - 212
Target Start/End: Original strand, 38280334 - 38280505
Alignment:
| Q |
41 |
acaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaagctgaatgcaactgcagtagttgatataacaga |
140 |
Q |
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|||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38280334 |
acaagaatgggcctaaaaagctgaaatcatgacctcttcttgcggcccaaaatgtgtaaagagtcaagctgaacacaactgcagtagttgatataacaga |
38280433 |
T |
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| Q |
141 |
tactagaatggctttccctgcatccgaattatcaagnnnnnnnntagcaattgttatttcaagtgttcagat |
212 |
Q |
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| T |
38280434 |
tactagaatgactttccctgcatccgaattatcaagaaacaaaatagcaattgttatcacaagtgttcagat |
38280505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 38313207 - 38313349
Alignment:
| Q |
21 |
aagaaccaacaaagcctcgaacaagaatcggcccaaaatgctgaaatcatgacctctttttgcggcccaaaatgtgtaaagagtcaagctgaatgcaact |
120 |
Q |
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||||||||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
38313207 |
aagaaccaacaaagctgcaaacaagaatgggcccaaaaagctaaaatcatgacctctttttgcggcccaaaatgtgtagagagtcaagctgaacacaacc |
38313306 |
T |
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| Q |
121 |
gcagtagttgatataacagatactagaatggctttccctgcat |
163 |
Q |
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| T |
38313307 |
acagtagtcaatatgacagcttctagaattactttccctgcat |
38313349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 38275639 - 38275710
Alignment:
| Q |
269 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
340 |
Q |
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| T |
38275639 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacgactctagaacca |
38275710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 38271890 - 38271961
Alignment:
| Q |
269 |
agatttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
340 |
Q |
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| T |
38271890 |
agatttgtttgggccaccataaacaagaaacaatcggtttggtttggatgttggtccacgactttagaacca |
38271961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 38280564 - 38280632
Alignment:
| Q |
271 |
atttgtttcagccaccataaacaagaaacaaacggtttggtttggattttggtccacggctctagaacca |
340 |
Q |
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| T |
38280564 |
atttgtttcagccaccataaacaagaaacaatcagtttgg-ttggattttggtccacaactctagaacca |
38280632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 38272078 - 38272042
Alignment:
| Q |
281 |
gccaccataaacaagaaacaaacggtttggtttggat |
317 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |
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| T |
38272078 |
gccaccataaacaagaaacaatcggttcggtttggat |
38272042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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