View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_38 (Length: 353)
Name: NF11453_low_38
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 334
Target Start/End: Complemental strand, 1869373 - 1869047
Alignment:
| Q |
8 |
caaatagagtccatcctcacatcatcgtcatcctcaaatatataattccttacaatttgatgaccatattgtaccactaacatctctttccaaacttctt |
107 |
Q |
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| T |
1869373 |
caaatagagtccatcctcacatcatcgtcatcctcaaatatataattccttacaatttgatgaccatattgtaccactaacatctctttccaaacttctt |
1869274 |
T |
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| Q |
108 |
attattgagataaaaacatatcctacatttttctaaaaggtttatgttaaccactctaaggtctcgcaactctaggatcccttcacttattttggtaata |
207 |
Q |
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| T |
1869273 |
attattgagataaaaacatatcctacatttttctaaaaggtttatgttaaccactctaaggtctcgcaactctaggatcccttcacttattttggtaata |
1869174 |
T |
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| Q |
208 |
tcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctcccttcataccttcatgggca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1869173 |
tcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctcccttcataccttcatgggca |
1869074 |
T |
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| Q |
308 |
catcttcatgaaagataggtagaaagt |
334 |
Q |
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| T |
1869073 |
catcttcatgaaagataggtagaaagt |
1869047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 1834750 - 1834604
Alignment:
| Q |
188 |
cttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1834750 |
cttcacttattttggtaatatcctcctatttcacccaataaatgttctttgaattccttagttcgccaaaaagtaactcatcctgaatcttaaccacctc |
1834651 |
T |
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| Q |
288 |
ccttcataccttcatgggcacatcttcatgaaagataggtagaaagt |
334 |
Q |
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| T |
1834650 |
ccttcataccttcatgggcacatcttcatgaaagataggtagaaagt |
1834604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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