View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453_low_39 (Length: 352)
Name: NF11453_low_39
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 21552115 - 21551876
Alignment:
| Q |
20 |
attgctccattgaacataaaaggtgttaacttagacaatgttccattcgagaaaaactatgctcctttatgggggaaagaaaatatacgaattctcgaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21552115 |
attgctccattgaacataaaaggtgttaacttagacaatgttccattcgagaaaaactatgctcctttatgggggaaagaaaatatacgaattctcgacc |
21552016 |
T |
|
| Q |
120 |
aaagccaagaagttcaaattaccttgaatcaaaattcaggtaaggtgtagagatataaattatattactatgaagaaaatagtgnnnnnnntgtgaagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||| |
|
|
| T |
21552015 |
aaagccaagaagttcaaattaccttgaatcaaaattcaggtaagatgtagagatataaattatattactatgaagaaaattgtgaaaaaaatgtaaagat |
21551916 |
T |
|
| Q |
220 |
ataaacataannnnnnnctttaatatcattgataagtgtt |
259 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
21551915 |
ataaacataatttttttctttaatatcattgataagtgtt |
21551876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 21551881 - 21551830
Alignment:
| Q |
289 |
agtgttttacggtgatttgattttaacaactgtttttgtcccacaggttctg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21551881 |
agtgttttacggtgatttgattttaacaactgtttttgtcccacaggttctg |
21551830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 21655616 - 21655725
Alignment:
| Q |
53 |
gacaatgttccattcgagaaaaactatgctcctttatgggggaaagaaaatatacgaattctcgacaaaagccaagaagttcaaattaccttgaatcaaa |
152 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| |||||||||| | ||||||| || |||| | ||||||||| |||| ||||||||| |
|
|
| T |
21655616 |
gacaatgttccattcatgcaaaactatgctcctttatgggggcaagaaaatatgcaaattctcaaccaaagtcgggaagttcaacttacattgaatcaag |
21655715 |
T |
|
| Q |
153 |
attcaggtaa |
162 |
Q |
| |
|
| |||||||| |
|
|
| T |
21655716 |
aatcaggtaa |
21655725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University