View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_40 (Length: 345)
Name: NF11453_low_40
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 43702669 - 43703003
Alignment:
| Q |
11 |
aagcaaaggcagaaccaaaggaaacggttccttcggaaaaacctaacaatattccgtcttgtattcgctgcatgcctccttcatccgtcgctataaccat |
110 |
Q |
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| T |
43702669 |
aagcaaaggcagaaccaaaggaaacggttccttcggaaaaacctaacaatattccgtcttgtattcgctgcatgcctccttcatccgtcgctataaccat |
43702768 |
T |
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| Q |
111 |
ccacgctaaacccggttcaaagtccgcatccataacaggnnnnnnnnnnnnnnnnngaatgttgcgtttcttcgatattagtttatgaaattgaaatttc |
210 |
Q |
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| T |
43702769 |
ccacgctaaacccggttcaaagtccgcatccataacaggtctctctttctctctctgaatgttgcgtttcttcaatattagtttatgaaattgaaattac |
43702868 |
T |
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| Q |
211 |
ggtgtaactgattattggttattgtaataagtagatgtgagcgatgaagctgttggtgttcaaattgatgcaccggcgagggatggcgaagcaaatgctg |
310 |
Q |
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| T |
43702869 |
ggtgtaactgattattggttattgtaataagtagatgtgagcgatgaagctgttggtgttcaaattgatgcaccggcgagggatggcgaagcaaatgctg |
43702968 |
T |
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| Q |
311 |
ctcttctcgattacatcagttctgtaagttccact |
345 |
Q |
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| T |
43702969 |
ctcttctcgattacatcagttctgtaagttccact |
43703003 |
T |
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