View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11453_low_42 (Length: 344)

Name: NF11453_low_42
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11453_low_42
NF11453_low_42
[»] chr8 (1 HSPs)
chr8 (15-335)||(44035728-44036048)
[»] chr6 (9 HSPs)
chr6 (28-183)||(31229855-31230010)
chr6 (109-173)||(30961151-30961215)
chr6 (109-173)||(30992633-30992697)
chr6 (109-173)||(31145371-31145435)
chr6 (109-173)||(31171684-31171748)
chr6 (109-173)||(31189429-31189493)
chr6 (109-182)||(31224656-31224729)
chr6 (109-182)||(31201227-31201300)
chr6 (118-150)||(31214396-31214428)
[»] chr1 (1 HSPs)
chr1 (112-165)||(49710915-49710968)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 44035728 - 44036048
Alignment:
Q  15 aagcacaagcaatgagagcattatttcaatgtcaaacgctagagggactgttgggtatgttgctcctgaagttttcaacaaaagtttcgggggcgtttca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44035728 aagcacaagcaatgagagcattatttcaatgtcaaacgctagagggactgttgggtatgttgctcctgaagttttcaacaaaagtttcgggggcgtttca 44035827  T
Q  115 cataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaagaacgttaacattgttgaagctagtcgttcgagcgagttat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44035828 cataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaagaacgttaacattgttgaagctagtcgttcgagcgagttat 44035927  T
Q  215 attttccgcatttggtgatctataagaagcttgagaagggaaatgatttggaacttgatgatggggtaatgtctaatgaggaaaatgagatagctaagaa 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44035928 attttccgcatttggtgatctataagaagcttgagaagggaaatgatttggaacttgatgatggggtaatgtctaatgaggaaaatgagatagctaagaa 44036027  T
Q  315 attgactatggttggtctgtg 335  Q
    |||||||||||||||| ||||    
T  44036028 attgactatggttggtttgtg 44036048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 31229855 - 31230010
Alignment:
Q  28 gagagcattatttcaatgtcaaacgctagagggactgttgggtatgttgctcctgaagttttcaacaaaagtttcgggggcgtttcacataagtctgatg 127  Q
    |||||||||||||| |||||| |||||||||||||  | |||||||| ||||||||  | |  || | || ||| ||  | ||||| || |||||||| |    
T  31229855 gagagcattatttctatgtcagacgctagagggacaatggggtatgtagctcctgagttatggaatataaattttggatgagtttcgcacaagtctgacg 31229954  T
Q  128 tctatagttacggaatgatgttgctagaaatggttggtgggcggaagaacgttaac 183  Q
    | |||||||| |||||||||||||||||||||||||||||| |||| ||| |||||    
T  31229955 tttatagttatggaatgatgttgctagaaatggttggtgggaggaaaaacattaac 31230010  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 30961151 - 30961215
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 173  Q
    |||||||| ||||||||||| |||||||| |||||||||||| |||||||||| ||||| |||||    
T  30961151 gtttcacacaagtctgatgtttatagttatggaatgatgttgttagaaatggtgggtggacggaa 30961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 30992633 - 30992697
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 173  Q
    |||||||| ||||||||||| |||||||| |||||||||||| |||||||||| ||||| |||||    
T  30992633 gtttcacacaagtctgatgtttatagttatggaatgatgttgttagaaatggtgggtggacggaa 30992697  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 31145435 - 31145371
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 173  Q
    |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| ||| ||||    
T  31145435 gtttcacacaaatctgatgtttatagttatggaatgatgttgctagaaatggttggagggaggaa 31145371  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 31171748 - 31171684
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 173  Q
    |||||||| || |||||||| |||||||| |||||||||||||||||||||||||| ||| ||||    
T  31171748 gtttcacacaaatctgatgtttatagttatggaatgatgttgctagaaatggttggagggaggaa 31171684  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 31189493 - 31189429
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaa 173  Q
    |||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||| ||||    
T  31189493 gtttcacacaaatctgatgtttatagttatggaatgatgttgctggaaatggttggtgggaggaa 31189429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 31224656 - 31224729
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaagaacgttaa 182  Q
    |||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |||| ||| ||||    
T  31224656 gtttcacacaagtctgatgtttatagttatggaatgatattgctggaaatggttggagggaggaaaaacattaa 31224729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 31201300 - 31201227
Alignment:
Q  109 gtttcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggtgggcggaagaacgttaa 182  Q
    |||||| | ||||| ||||| |||||||| |||||||||||||| ||||||||||| ||| |||| ||| ||||    
T  31201300 gtttcatacaagtccgatgtttatagttatggaatgatgttgctggaaatggttggagggaggaaaaacattaa 31201227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 31214396 - 31214428
Alignment:
Q  118 aagtctgatgtctatagttacggaatgatgttg 150  Q
    ||||||||||| |||||||||||||||||||||    
T  31214396 aagtctgatgtttatagttacggaatgatgttg 31214428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 49710915 - 49710968
Alignment:
Q  112 tcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggt 165  Q
    ||||||||||| |||||||| ||||||||||||||| |  |||| |||||||||    
T  49710915 tcacataagtcagatgtctacagttacggaatgatggttttagagatggttggt 49710968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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