View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11453_low_43 (Length: 341)
Name: NF11453_low_43
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 334
Target Start/End: Complemental strand, 50371499 - 50371178
Alignment:
| Q |
16 |
cattaactatttctatgtgaggaactagttaaggtggatgtctcctttcttgcatagactcttcatgttctacgaattagattaattggagagnnnnnnn |
115 |
Q |
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| T |
50371499 |
cattaactatttctatgtgaggaactagttaag-tggatgtcaccttccttgcatagactcttcatgatctacgaatgagattaattggagagaaaaaaa |
50371401 |
T |
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| Q |
116 |
tgaaagagatagaaaaggccagcaatctaatttctattctttaccaacatatatgatgcatgcgctaagaagtgta----acccaagcaaaggtcatagt |
211 |
Q |
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| T |
50371400 |
tgaaagagatagaaaaggccagcaatctaatttctgttctttaccaacatatatgatgcatgcgctaagaagtgtacgtaactcaagcaaatgtcatagt |
50371301 |
T |
|
| Q |
212 |
ctttaaattaagttgatggtgactttacctttcatttggcacatgaaaaccatgttactctctccccacaattcttctcatcaagacaaagagcattgca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50371300 |
ctttaaattaagttgatggtgactttacctttcatttggcacatgaaaaccatgttactctctccccacaattcttctcatcaagacaaagagcattgca |
50371201 |
T |
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| Q |
312 |
agaggtaaataatgggccctatg |
334 |
Q |
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||||||||||||||||||||||| |
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| T |
50371200 |
agaggtaaataatgggccctatg |
50371178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 55075052 - 55075127
Alignment:
| Q |
22 |
ctatttctatgtgaggaactagttaaggtggatgtctcctttcttgcatagactcttcatgttctacgaattagatt |
98 |
Q |
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| T |
55075052 |
ctatttctatatggggaactagttaag-tggatgtcaccttccttgcatagactcttcatgttctgcgaatgagatt |
55075127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 55075194 - 55075273
Alignment:
| Q |
221 |
aagttgatggtgactttacctttcatttggcacatgaaa-accatgttactctctccccacaattcttctcatcaagacaa |
300 |
Q |
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|||||||| ||||||| |||||||| ||||||||||||| |||||||| ||||||||||||| || |||||||||||||| |
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| T |
55075194 |
aagttgattgtgacttaacctttcacttggcacatgaaagtccatgtta-tctctccccacaaatcatctcatcaagacaa |
55075273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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