View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11453_low_47 (Length: 318)
Name: NF11453_low_47
Description: NF11453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11453_low_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 22666858 - 22667146
Alignment:
| Q |
16 |
agtcatgaacataattataatttttccttctattaattgtagtgcatacaaaagctagtttattctgcatcttttggctgattagttattttaaacccat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22666858 |
agtcatgaacataattataatttttccttctattaattgtagtgcatacaaaagctagtttattctgcatcttttggctgattagttattttaaacccat |
22666957 |
T |
|
| Q |
116 |
gtgatttagtatgttaatggcactctttctaagtgnnnnnnnnnnnnnnnnagtctagtaatctagtgactataactcacacaattaaatgtgattgtaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22666958 |
gtgatttagtatgttaatggcactctttctaagtgttttttttttttt---agtctagtaatctagtgactataactcacacaattaaatgtgattgtaa |
22667054 |
T |
|
| Q |
216 |
atgtatttcaaatactcgcaaagaaaccatatagatatgattaaatataaatacgaaccatcaaagtctttgacagcgtttttaaccttctt |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22667055 |
atgtatttcaaatacccgcaaagaaaccatatagatatgattaaatataaatacgaaccatcaaagtctttgacagcgtttttaaccttctt |
22667146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 41865034 - 41865070
Alignment:
| Q |
172 |
agtaatctagtgactataactcacacaattaaatgtg |
208 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
41865034 |
agtagtctagtggctataactcacacaattaaatgtg |
41865070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 16975194 - 16975158
Alignment:
| Q |
168 |
gtctagtaatctagtgactataactcacacaattaaa |
204 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
16975194 |
gtctagtaatctagtggctagaactcacacaattaaa |
16975158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 11333786 - 11333746
Alignment:
| Q |
168 |
gtctagtaatctagtgactataactcacacaattaaatgtg |
208 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
11333786 |
gtctagtagtctagtgactagagctcacacaattaaatgtg |
11333746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 11491807 - 11491767
Alignment:
| Q |
168 |
gtctagtaatctagtgactataactcacacaattaaatgtg |
208 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
11491807 |
gtctagtagtctagtgactagagctcacacaattaaatgtg |
11491767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University